Gene detail

Detailed information of BRAKERYMEP00000012516.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029206417.2, cGMP-specific 3',5'-cyclic phosphodiesterase-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000012516

ATGACAAACGTCGCGGAATTGAGCAAGGATCTGGTCGAAAAATATCTTGATGAACACTGTGACTTTACGAAGAGCTACTTTCAACGAAAGGCCACCTCTGCCATGGTTGACAACTGGATGAGCAGTAGATCGCATCAACCTGGATCACGAGCTATGCAAGTTAGCCATCTCCAAAGAGACAGCACCAAGACTCACACCATTCTAAAACCCGATGGCGACTTTAACGATGGTAGACTTAATTCCATATTCGGGCTCGGAAGCGAAGGGAGGAGACAAAATTCCCCGCGCCGAAAATCTACACTTGCAGAATTGGACGAGAAAGAAGTTTTTATGGAATTAATCAGAGACATCGCGAACGAGCTGGACATAAATATGCTGAGTCACAAAATCCTTGTTAACGTCAGTATACTAACAAATGCGGACCGTTGCTCTCTGTTTCTCGTACGCGGCTCTCGTGAAAATAAGGTTCTTGTATCTAAGCTCTTCGATGTGACTTCCGAATCCACGCTGGATCAGTCAATAAGGTCCGAAGAGGATGAAATTTGTGTCCCTATGGGGGTTGGCATCGCCGGTCACACTGCAGCAACCGGTGAAACCATCAACATAAAAGACGCATATTCGGATCCTCGTTTTAACGCTGAAATCGATAAGGCCACTGGATATAAGACTCACAGTATTTTGTGCATGCCAGTTAAAAGCCATGATGGAGAGGTGATCGGAGTCGCACAGATCATCAACAAGATTTCAGGAAAACATCAATTTACGGAAAAAGACGAAGAGGTTTTTAAGAATTATCTCACGTTCTGTGGAATTGGGATTACAAATGCTCAACTCTTTGAAATCTCTGTACAAGAATACCAAAGAAACCAGATTCTCCTTCAACTTGCAAGCAGAATATTTGAAGAGCAAAGTAACCTTGACACATGTGTCCACAACATCATGGCAGAATCACTGGAATTGCTCGATGTTCAACGCTGCATCGTGTTCCTAATTGACGAGTCTTGTGAAGGCCAAGATGTGATCTTCTCCAAGGGTTTTGATCTGCACTCTCGAGATGTTCAGGGAAATAGTGGAGAAACAACTCATACTCACTGGTCAATGAACACAGGCATTGCAGGATTAGTGGCATCCACTGGAAAGGCTGTTAACATCCCTGATGCTTATGCTGATAGTCGCTTTAATCCAGAGGCAGATGTTGAAAGTGATTTTAAAACCACATCTATTCTTTGCATGCCAATCTTTGACCGAGGTCAAAAGGTTGTAGGGCGTGACACAAAGGAACATGACACAAACCTGGAGGCGCTCCTAAAGAAAAGTCGCGAAAAGAATGTCACGttcaacaaaggaaaatgcgaATTCAACAAAGAACGCGTAGTCTATTACGGCTTAATGTTCTCAAAAGAGGGAGTATCCCCAGACCCTCGTAAGGTACAGGCTATCAAGGAGGCGGGCCGCCCAAGGAATGCAGCGGAACGTAACTCTTTTCTGGGCACAGTCAGATATAGTTCACGGCTTATGGAAGTCAGCAAGTATCAGAAAGCAGTCTGCAAACTCTGGGAGTTAGTAAAAGGGAAATTTGAATGGATGCAAGAGCACACGGGAGCATTTGAAGAACTCAAGAACATGCTCAGTAGTGAAACGGTACAAGCCTACTTCGATCCCCAAGGGGAACACGAGCTCCACGTGGACGGGTGTCCGATGGGACTGGCAGCCACTCTCACGCAGAGGAAGCCTGGAGAGCAAGTGTGGCAAGTTGTGCAGTACTCTAGTCGAAGCCTCACAGGCACAGAAAAACGGTACAGCCAGATCGAGCTAGAAGCCTTAGCGGGTGTTGCGCAGTTGCTGAATAAGAGCAATGGTAAACCATTCACTCAGAGTGATGAAAATCTGTTTGAGGCATTTGCCATCTTCTGTGGCCTTGGAATTCACAATGCACTGATGTATGATCAAGCATGCAAGTTGCTGGCCAAACAGTCTGTGGCTATGGAGGTTTTGTCGTATCATGCCTCAGCCCAGCAAGGAGAAGTTGACAAGATAATGaaacaaaagattgaaagtgcGGATCATTTCAAGTTGTGCACATTTGAGTTCAATGATTTTGATTTGACTGATGATGAAACCGTTATGGCATCAATACGAATAATGCTTGAGCTTGATTTTATGAATGCTGTTCACGCCAAACAAGAGACCGTGTGTCGTTGGTTGATGAGTGTCAAAAAGAATTATAGGCCTGTTATTTATCATAACTGGAGACATGCTTTCAATGTGGCGCAGAGTATGTTTACAATGCTTACGACTGGTAACATGAGGAGATTTTTCGGCGATCTGGAGGTGTTTGCCTTAATAGTGGCTTGCTATTGTCATGATCTGGATCATCGCGGTACCAACAATGCTTTTCAAACCAAGACGGAATCTCCGCTGGCTCAACTCTATGGAACCTCAACTATGGAACACCATCACTTTGATCACTCAATCATGATCCTCAATTCAGAGGGAAACAACATATTCGAGCATTTGTCTTCGGAAGATTATCGCAAGACTATCAAGATTTTGGAACATGCTATCTTGTCTACAGACCTTGCACTTTATTTCCAGAAGAGGGGAAATTTTGATAAACTTGTTCATAGCGAATCAGCCGACTGGAGTCTTGAGAGCAACGGAGAGCTGTTACGAGCAATGATGATGACAGCCTGTGATGTGGCAGCCATTACTAAACCATGGGAAATACAACAGCAGGTTGCTGAACTGGTAGCAAGTGAGTTTTTTGAGCAAGGTGACATTGAAAGATTTCAACTCAACTCTGAACCAATTCCCATGATGGATCGCAAGAAGAAAGATGAGTTACCCAAGATGCAAGTTGGCTTTATTGACTTTATCTGTTTGCCAGTGTACACTATGTTTTATGATTTGGAGCCTTGCTTGAAACCATTTTACGATGGATGCGTGGAAAACAGGAGAAACTGGCAGGCACTGGCGGACAGGAGAAGCAGTGAAGGTTAG

Transcript

BRAKERYMET00000012516

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3LVW5	cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila ananassae OX=7217 GN=Pde6 PE=3 SV=1
B4LVU6	cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila virilis OX=7244 GN=Pde6 PE=3 SV=1
B4JXX2	cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila grimshawi OX=7222 GN=Pde6 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000883 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01590 all species →	GAF	GAF domain	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00233 all species →	PDEase_I	3'5'-cyclic nucleotide phosphodiesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029016 all species →	Homologous_superfamily	GAF-like domain superfamily	Interproscan
IPR003018 all species →	Domain	GAF domain	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR023088 all species →	Family	3'5'-cyclic nucleotide phosphodiesterase	Interproscan
IPR036971 all species →	Homologous_superfamily	3'5'-cyclic nucleotide phosphodiesterase, catalytic domain superfamily	Interproscan
IPR003607 all species →	Domain	HD/PDEase domain	Interproscan
IPR023174 all species →	Conserved_site	3'5'-cyclic nucleotide phosphodiesterase, conserved site	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR002073 all species →	Domain	3'5'-cyclic nucleotide phosphodiesterase, catalytic domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11347 all species →	CYCLIC NUCLEOTIDE PHOSPHODIESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004114 all species →	Molecular Function	3',5'-cyclic-nucleotide phosphodiesterase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13298	PDE11; dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11	EC:3.1.4.17 EC:3.1.4.35	Cushing syndrome	ko04934	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.