Gene detail

Detailed information of BRAKERYMEP00000012871.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029198239.2, probable RNA-dependent RNA polymerase SHL2 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000012871

ATGGGATTTCCCTTCTTTGTTTCGTTACCAGACGACGAAAGACCCCCAGAAGAAACTCCAAACAGTGGAGAAAATCCGCTGTACGTAAAGCACGTTGTGATTAAAGATACTGGACCAGCTGTTGCTTCATATAAGAGAATCGAAAATTCCCTGCTTATTCACCACCTGGTCAGTTCACGCGGCTTGGCAGTGCTTTGTCAACTGATGGTCATTAAATTTCTCTCCAACGACCAAAACTTCATCACTGAGATTTTAAATAAAGGTATCGAATGCAATGGCTCGCAGTATCATTATCTGGGACAGTCAAGCTCGCAGTTACGAAACAAGACATGTTTTATGATAGATGCCTCCATAAATGACATCTACATCTTACTGGCTGAATTCGAGAAGTTCGAAGAGATCTTCCCCGTCGCCAGACGAAGTCAGACGATTGGTCGGCTCTTTGCGCCTTTTTCGCGCACTTTGAAACTCAAAGCTGATGAGGTTGACGTCATCGATGACATTACAAGCCCCCTTGGTGCGTATGTTTTTACCGATGGGTGTGGATTGATGTCCGCTGAACTTGCAAACGAAGTGCAAAGGTTGTATAATCTTTCCAATGTACCTAGCGTCGTCGAAGTAAGATTCAAAAGTTTCCGTGGCGTTCTTGTGCGTTTTAACGAGATGCCTAACCTGCGAATGAAGGCACTTTTTCGAAACTCTATGGCTGATCTTTCCCGCGCTCGTCTGGACGACATGGGTGAAGTCAGCACTCTTGGAATCGTTGATTTCTCACAGCCGTACTCACTGGGTTATTTAGACACACTTACAGTGATGTTGCTAGCCGAGACAGGTGTTCCAAAGGAGTACTTTGAGAAAATGCAGGCGGACTATCATAAAATGCTCCTGAATCTGGAAGACAAAACTTACGCTGCTTACTTCTTACGAACAACTGGGAATGAAAGCTTGTTAAAGGCATTCAAAACAGAGGGATTGACCGACGAAGTACTTAAGGCGTTGCAGCatttaaaaattgaagaaatggaaaagatgaaaagagagaaagctgCCGATGACAACGAAGAAAGTGACCATGAAGACCAATGGCTAATTAAATGGAGGAAGAAACAAGAAGCAGAAGAAAAACGTGAAATTGATCCTGGAAGAGCGCAGACAAATAAATCCGGCGACAATTACAGATCAAAAACTAACGTCGAAGATGTTCTTGTAAATCAAGATTTTGATGTACGAATTTTCACGCCTGATGCCAGAGTAGTCTACGGAGTTAGCGATCCCTACGGTCAGCTGAACTACGGAGAATGCTTTTTTCAGCCAAAGTTGCATAAAGCCGAATCAGATACCTTCGCCATGGCTGACAATGTAGTTGTCATACGCCGGCCTTCCTTTGACGTAGGAGATGTGATCGTTTTAAAACTGACTCACGGCAAGGAAACTTATAAGGATCTAAATGACTGTATCGTGTTCCCATCCAGGGGGATTAGACCTCATGCCGTTGAATGCGCTGGGGGTCGAGTGGGTGGTGACAAGTATTTTGTTTCCTGGGATCCAGGCTTGATCCCTCGTTATGTCAGCAGTCCTTGCGTGGGTTTCGCGATGATGTCGGCATCAAAACTCGCAAACAAACTGAAAGAACTTGCAACGAGCTTGAGGTGCTTCAAAGAGAAACCTGCAAGCGAGGCAGAACAGAAGAAAAGGCAGCAGATAGCGTACAAAGAGCTGGTGGAACATTTTGCCAATTTTAAAGATCAGGACGACCTGCGCAACCGGGCAACCACTTTGTTCCTTAACTACGCATCTTTGTTCGGTTCCACATGTTCGGAAAGCCAACTTCTTAAGAAAATGCTCGCCACAGAATTTGACTGGAGTGAGCGATACGGCAGGCTTGCTGAGAAACTGGCTGACTTAGAATCTGcttatgaaaaagaaattaagaCATTCGCTAAATTATCCCGCACTAGTCAGTTGCCATCGCAGCCCGCGAGACCGCCCGGTATGTGGGATCGACTTTTAATCTCAAGGCAATGGAAGAAGCCAGCATTTCGCACCGGAGATGACGTATGGAACAATATTAAGGCGAAGAATGCTGCGTTTCtgaagaagcaaacaaactcGTGA

Transcript

BRAKERYMET00000012871

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9SG02	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001327 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05183 all species →	RdRP	RNA dependent RNA polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007855 all species →	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079 all species →	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003968 all species →	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031380 all species →	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000012871.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.