Gene detail

Detailed information of BRAKERYMEP00000013506.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3037415.1, unnamed protein product [Pocillopora meandrina]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000013506

ATGCAAAATGAAGGAATCTCGGATGAGAGTATTACGTCATCCTCAAAATTGGACTCAGATCACGAGCCTTTCTATGGACGACTGTACGGATCTGAGGCTTGGTGCTCAGCAGAAGGCGATGACGATCCAtatattgaaattaaattagaCGAAGAAAAGGCAATAACAGCAATAGCCACGCAGGGAAGTTCATCTGATATGATTTGGTCGAGAAGATATAAGATCGAGTATTTCGAGGAAGGAAAATGGACGCGATACAAAGAGGACCTTCCTGGTAACAGAAACATCGGCTTGGCAAAAAAGAACTACTTGGATCCGGAAATCATAACAAGATCGATGCGGATTTATCCGAAAGACCCATTCGCGGTGTCTCCAAACGTGAAATTTGCGTGTCTAAGATTGGAGCTGTACGGATGCCGTGCACCTGGCTTCGTTCTGGTTGGAAATGAAACTTCCTTCTGTCAATGGGGAAAATGGAACAACGCTCTTCCACAATGCAAAGCCACTTGCAAGGATCCTGGGATACCAAAGAATGGAAACAGAAAAGGAAGTAATTTTATAGATGGCGACTCGGTAGAATTTTATTGTAACAGAAACCATAGCTTGTTTGGATCTTCAATTAGCCAATGTCTCGACGGAAGATGGAGTTCAGTATTGCCGCAATGCAGAGCCTCTTGTCCCGATCCTGGAAAACCTCGCAATGGTGAAAGAATTGGCACAGTCTTTGCGCATGGCAAACACGTACAGTTCAAGTGCAATGATGGGTTTCGCTTGGTTGGAAGTCAGCTGATCGTGTGCCATGAAGGGAAATGGAGTAACGACGTGCCGAAGTGTCAAGCGGTTTGCAGTGATCCTGGGATTCCACTCCATGGAAAGAGGATTGGCAGTGATTTTGGCGATGGTCAAATGGTTGCGTTCTCGTGTGATTCGAACTTCAGTTTGGACGGTGCTTCTACTGTCTTCTGTGTAGCTGGTCGATGGAGTGCTACAAGACCGGCATGTAAAGCGTCATGTGCTGACCCTGGTATGCCTGAGCACGGCCGGAGAATAGGCTCTAATTTTGGTCATAAAAGCCAGGTAACCTTTGTGTGTCTGCCCAAATACAGCATGCTGGGAAGTTCGTCAATGACATGTCATGACGGCAAATGGAGCTCAGTCCTTCCTTTTTGCAAAGCCTCCTGTAAGGACCCAGGCTCCCCGCTAAACGGTATTAGACATGGAAACGACTTTGGTCACAACAAGCGAATTTCCTTCTCATGCATTCCGGGATTCCAGCTGACTGGAAGTTCCATTGCAATGTGCATCAACGGAACGTGGAGTGCACCTGTGCCTCGCTGCAAAGCTCTTTGCCCCGATCCTGGAGTCCCTATGAATGGCAAAAGAGTTGCAAACAGTTTTCATGATGGTGAGACTGTGGCTTTTATGTGCCAACAAAATTACAGGCTGATTGGTCAACAAGTTTTACATTGCATGGCAGGGAGATGGAGTAACAATGTACCAGAATGCAAAGACATAGACGAATGTGCAGAGGGCCTTTCCAACTGTCACGCGAACGCAATGTGCTTAAATGTTCTTGGCTCATATGCATGCCAATGTAAAGACGACTTTGTTGGAAACGGCAGGACATGCTTAAAAAGGTGCAGCGATCCGGGAATTCCCCCTAATGGCACAAGAAAGGGTAATCGTTTTTATCATGGAAGACGAGTCAGTTTTTCGTGTAATGACAGGTACACCTTGGTGGGTAATGGTGTAATAACCTGCCAGGAAGGAGAATGGACCGCAGCATTGCCTCAATGTAAAGAGAATTGCGCCGATCCTGGTTCTCCATCAAATGGCCTCAGAAGAGGCAATAATTTTAAACACGGAAACGAAGTGAGCTTTTTTTGTCGACCCCATTTTAAGCTGAACGGAGTCAACAGTATCAGATGTGATGATGGTGCATGGAGCGATGAACTTCCAGTTTGTTCAGCTACTTGTCCCACTCCACGCAAACTTGCTCACGGCTCACACGACGGTAATGGGGATCTTAGCAGTGGAACAAATGTGACCTACTCTTGCGACCCTCAGTACTTTTTGGAGGGTGAAGATGTCATAACATGTGTGGACGGACGGTGGGTGGGAGAGGCGCCAATATGTAGAGcCCCATGTCCACCTCCGCTTACCCCAGCTAATGGTTTAGTATTTGGAGAGAATCACCAGCACCATGGGGTGATTCAGTTTTGGTGTAAACGAGGTTTTATCCTAAATGGCGCCAAAACGAGCGAATGTGTTGATGGAGAATGGGACGCACCGGTGCCTATTTGTCAAGGTGGTCCATCCGGCTGCCGAAAACCTCCTACCCCGCTGAATGGTTACATGCTGAATTCACAAGCTCAGAAAAAGTGGTTCAACGACGGAGACAGAATGTATTTCCGCTGCGACCCGGGTTTCTCACTAGCAGGGTTTCCTATTCTACGTTGCGGTAATGGTTCATGGACTGAGCTTGATTTCACTTGCAATGCTAAATCGTGTGGGGATCCAGGGACACCGAACAATGGCCGACGGAATAGTTACCTATTCACGTACAACAGCACCATAGAGTACTCCTGTGATCAAGGCTACACACTCGTTGGCTCCAGGACGCGTGTCTGTCAGGCTAATCAGACATGGACGGGGACAGTACCACAGTGCTCATCGATAAACTGTGGCACTTTACCCACCCCCGACTATGGAGAAAAGGAGTTGGAGACGTCGACTTTCCTAAAAGGCCGAGTAACATTCCACTGCAGGAGGCCAGGATACAAGCTTGTGGGATCATCTACGAGGATATGCCTGGCAAGTGGGTTGTGGAGTGGACAGCAGCCAATCTGTAAATGTACGTCAGCTGAGAACTAA

Transcript

BRAKERYMET00000013506

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z407	CUB and sushi domain-containing protein 3 OS=Homo sapiens OX=9606 GN=CSMD3 PE=1 SV=3
Q80T79	CUB and sushi domain-containing protein 3 OS=Mus musculus OX=10090 GN=Csmd3 PE=1 SV=3
Q96PZ7	CUB and sushi domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CSMD1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000334 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR050350 all species →	Family	Complement & Cell Adhesion Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19325 all species →	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000013506.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.