Gene detail

Detailed information of BRAKERYMEP00000013589.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3018864.1, unnamed protein product [Porites evermanni]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000013589

ATGTTATCCTTCTTTTACACAGatgacgacgccgacgacgaagGTACCAACGCAGAAGGGCTGGCATTCACAATGATTGGGACAGCTATTGATGTTGGCATCAAAGGACACCTGCTGCTTGCAGAAGGCAGCGGAGAGCCAACAGAGGATTGCCATAGATTTGAAAAGAGCGTAGCTGATCGCTACAAGGACCAGAAATCTATTGAGAACAGGACAATCCGAGAACAACTACAAAAGCGTCTACCGCAAGGTGTTGTGTTCGTTAATACAGAAAACGGGTCTATCATCTCCACCTTTCGTCTGTCAAGTGAAAAGGCGGCAAACGAATTGTGGGAAATGTACAGTGAAGGAAAATTTCAGTCAGTGCTTCAGGAGGTTCTGGTGGAAGACGCGCTCAAAGAGGATGAGAAACCAGAAAAACCGTTGGAGTTACAACTTAACCTGGTTGAAGAGCGCTTTGAGAAAATTCGAAAGAAACTTGCAGGCACAATTGGTGCAATTCTTCTGAGTTTTCGTCTTGCAGTATTCCTGGGATCCAAAGCCAACTCCATTGGTGGCTGTGAGCTGGTGTTGAGGGAATACCAAAAGGAGTTAGCGGAGCCAGCTGTCCAAGGCAAAAACACCATCATCTGTGCACCCACCAACAGTGGGAAGACTTACGTGGCTATTGAAATCGTCAAAAAGCACTTGGATGGCTTCGCAAGAAATGCAGACGACCCAAATACATCGGCAGCTGCCACCAAAACCAGCAAGGAACCACGGGTGGTGTTCATTGTCAGCACAGTGAACCTTGTCTTTCAGCAAAAGGAGAGATTTGAAGCCTTCGTGGGGGACAAATACTCTGTGGGCGAAATTTCAGGGGCGAACTGTGCGGAGATTCCGCTTAAGTTCCTGCTTCAGAATAACGATGTAGTAGTTATGACCGCCCAGATTCTTGTGAACGCTTTGAAGAGTGAAACTAAAGGGGAAAGAGTGGAGCTGAAAGATATCAGTCTGTTGTTATTTGATGAATGCCATCATGCTCATAAAGAGCACCCGTACAACAGTATCATGGAGACTTATTTGGCCTTGAAGTCTCAAGCCGGACATCAGCACCGCTTGCCACAGATCATTGGCCTGACTGCCTCCCTTGGTACAGGTAAAGCTAAGAGTGTGGAGAAAGCTGAAGAACATATTATTCTTGTTTCTGCGAACCTGGACGCTGAAGCCATTTCAACTGTGAAGAAAAATCGCGAAGAGCTCGACAGCTACGTCAACTTACCTTCACGAGACACGCATTTTGTGCCGAGAAACGATCAAGATCCATTTGAAAAGATTATCTCCAAGGTGATGGACAAAATTGAGGCCCAGGTAAAGAAGTTAAAAGGAAAGTCCTTCCATCCTGCACTTCCAGATAAAGCTGGTCAACAATATCGCCAGTGGGTAGAGGAGCTGTACAAAGATTCTGTTGCTGACGCGAGCCGCTTTTTAGTGACCTTTGCTGAACACCTCAGAGAGTACCACGTCGCCCTGACCTTAAACGCAAACACTCGTATGAAGAATGCCAGAAAGTATCTCACGAAATACTTCGATGCTTTAGACACAGAGAAGTTTATGGAAATtgacaaaaatttgaaaaagctcTTCCACAAAGCAATGGACGCGTTGGATTGCCACATCGAAAAACACGGTGAGCCGGAAAATCCAAGACTTAAGAAACTCAAAGAGTTGCTGCTAGAGAACTACGAAGGCGTCAAACCACAACAAAGTAACGAAGATCAATCCGACAAAAACAATGGTGAGGAAAGTCTAGGTGGCGGTCAAGACGAGGGAGGAAAAGTTGGTGGCGACGAAACCATGGATTGCAGCATGGATGCGAAAGTAAAAGAAAGTGACGATGGCATTGACCTGGctaagaaaaatgaagaaaagacagAAGAGGACATCAGTGAAAACGTAGCGACTGCAGCAGTGGAGGAGACTGAAAAGTGCGGGGCCGAAAATTCAAACAAGGATACTTCATTGGGAAAGGTGGAAGAAAACTCCCCAGAAGACGCCGGCGATCAAGCTCCCACGAAACGAGATGATGCAAACAGTGAGGACGCCATTCAGACTGTTCAAGAAGCCGATGAGCTGGACCATACTGCCAATGAGACATCTCAAGAACAGGCTGAAGCGGTGGACGAACAGGGACCCGAGAACGAAGAAAGTTCCTCGTCAGACGGAGCAGCTGAGGACAAGTCTCCGGGTGAAAAGAGCGCCCACCATCCAGAATGGGAGGGTCCGAAAGGCATCTTATTCATCAGAACTCGCGAGTCTACTGTCGCCTTATTGGACTGGATTAAGGAAACGGAGGAACTGAACACTGTCCTCAGGCCAGAGCCACTTGTTGGTAGCGGAGATGGCAACATCGGAATGACGCAGAAGGAACAAGAGGGAGTAATCAAAAGGTTCAAAACAGGTGAAAAGAATCTTCTCCTGGCGACCAGTGTGGCTGAAGAAGGTTTGGACATCACTGATTGCAACTATGTCATCCGTTATGACATGATGGGCAACGAGATCTCCTCTGTGCAATCAAGAGGACGCGTCAGAGCAGAAAAGGGGAAGTACAGCGTACTGGTGGGTCATTCAGGAGCTATGAAAAGGGAGTTTACTAGCAACTTTCGAGAAATGCTGATGACTGAGGCTCTTACCAAAGTACAGAACATGAAACCATCGTCTTTTACCAAGACGGTTAAAGAAGTTCAATGTCAGATTGCCCGGGACCGCTTCCTCAAGAAGCATGTGTGTGCCACACAGAAGGCAGTTATGATACCCGACGATGTGACTTTCCGCTGCCGAAAATGCAAAGAAGTGGTCTGCCAGGCGCATGATGTCCGTCGCATCAAAGGCAGTCACCATGTTATCATTAACCGTGACTGTCGTGACACTAAGGTGGATATAAAAGAACACCCGAATCCTAAGAAAATTGATGACATAGAAATGAATAAGAAGATCTCCTGCAAGAAATGTAGTGAAGATTGGGGAGTCACAGCTCTCATTTATAACTTTGAATGGCTGTGTATCAAGATCAGCAGCTTCGTTCTGGAGTTCCCAAACAACGATCGTCCCAGGAGGATGTACAAAAAGTGGAAAGATTTGCCTTTTGCCATCCAAGAAGCCGGCCTTGAGGAGCTGCTGGAGCATGGTACTAACAACTCAGAGGCAAATGATTTATTAGACCTGGACTTTTCCTAA

Transcript

BRAKERYMET00000013589

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6Q899	Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2
O95786	Antiviral innate immune response receptor RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Q9GLV6	Antiviral innate immune response receptor RIG-I OS=Sus scrofa OX=9823 GN=RIGI PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001752 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF11648 all species →	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF18119 all species →	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR021673 all species →	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR041204 all species →	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR038557 all species →	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000013589.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.