Gene detail

Detailed information of BRAKERYMEP00000013622.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029192562.2, laminin subunit gamma-2-like isoform X1 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000013622

ATGACAATTTGCAAGCTGTTGGTTTCACTCCTCATTCAGCTTCTTTTGCCCTTCTTAAATATATCCTCAGCAGAGGAAACTTGTAATTTCAGTGGCTGCTATGCAGATTCTCAGAGGCGTATTCCAGTCCCCTGCATAGCTTACGCAGACAATATTGCTTTCAGGAGGAATATCACAGCAACAAGCACCTGTGGTACACCTGCCTCTGGATTCTGCGAGATGGGTCCTGGAGGCAAATGCTATGAATGTGATGCAAACAGCATCACCAAGAAACATCCACCAGAGTTTATGGTGAACAGTGAATTTGATTCCCCATATGCCCTTGACGAGGTGACGTGGTGGCAGTCTCCGACATGGTGGGATGCATACAACCAAAACCTTACGACTATCAACAGTCCTTTGAAGGTAAACATAACACTGTCATTTGGTAGAAGTTTTCATATATCAGGTGGTATAATGGTGAGGTTTTACAATGGAAGACCGAAAGAAATGTTTCTGGAGAAATCTAAAGACTTTGGGAAAACATGGACAGTTCTGCAATATTTTGCTTTCAACTGTGAAAAGTCATCTTACAACATGCCTGGATCACCTCCTGTCACTAAAAGCAGTCCTTTTAATGTGACCTGCACTGAGGATTACAGCTTGACATTACCTCCAAGATATGGAAGAGTGGAGTACAGATTTGATGCAAGGTATGATCCAGGGTGTGGTTATTTTGATCAAGATGTCCAGAACTTTATGCTTGCAACAAATGTGCGTATCAGACTGGAAGAACCTTCTTCCTTAGATTACCTTGGAATCTTATTTCCAACTCAAGAATACCTTAACAAGTACTACTATGCAATTTCAGATATCGTTATTACAGGGCGTTGCGACTGTAATGGCCATGCAGAATACTGTACTGGCCCTGTCATGGAAGAAACTTGTGTGTGTGAGCATAATACTGCTGGAACTGACTGTGAAATGTGCAAGCCATTGTTGAATAATCGTCCCTGGATGCCAGCCAATCAAACCCATGCAAACGAATGCCAAGaGTGCCAGTGTAATAACCATGGATTGTCCTGTTCATATAATGACATCCTGGGTGTTGGCATTTGTACTAGTTGTAAGGACAACACTGTGGGACAGCACTGTGAGGAATGTCTATCAAACTATTACAGGAATTCAAGTGTGCCAAGAGATCACCCAAACACTTGTGTTGCATGTGACTGTTTCCCCAAGGGCATAACAGACAATGGTACTTGCGTGCAGGAGGCCACACCCACACAGGTGGCTGGGCAGTGTCACTGCAAGAGCAATGTGTTTGGGCGGCAATGTGACCAATGCATCCCAGGATACTGGGGGTTCACATTGGATCCAGCTGGAGAATGTAGAGAATGCAAATGTAATAGCTTTGGTACTGATAGCAACACCATACGGTGTGACCAGTACACAGGAACGTGTATGTGCAGGCCAACTATACAAGGCAGATATTGCAGTGAGTGTAAAGATGGCTTTTACTTTTTCCCAATCGCTGATGGAACGGAGTGTCTGCGGTGCCCTTGTGATATTGGTGGAGCTTTTCTTCGGTGTGACAAGACCTCAGGATCTTGCTCATGCCGTAGTGGTGTTGAAGGCAGCGCCTGTGACAGAACTCAACACGGACGGTTTTATCCATTCCTGGACTTCATCACATTGGAAGTCGAAGACATGCATGGTACCTTCAGCACCATGACTCAGTATGCAGGTCGTGGTGTGAACTTTACTGGTACTGGTTATGGATCTTTCCTTTCAGGGCAATATGCTTTCACCAGTGCGTCTAACGTACTGGCCAGTTATCATTACCGTGCTGTTATTCGGTACAACTTCTCACCATTTTGCAGCATTGGGTCTGCAGCGAAGCTCACTCTGAAGGTCGTAGCCCTTAGTGTGAATGAGAGCATAGAATTCAACATCTCTTTGGACCAGCTACCAAGTGGTTCTGGACAGGCATGGACATTACTGAACACTGTAGAATTGTTTGCAGGGGAAGTACATAATTTTACACTAATTTACAACGGCCCTGGTGGTAATCACAACTGCTCATTTCTTGTCGACTCAATAGTCTTCATTCCTGACCTTAGCCGCTCCCGAGTCTACACTGAGTCAGGTCCAGACACTCGTAACCAGCTAGAGAGTTGTTTGCAAGCCAGGGCATCTCTCCCTGTTGTGCAACCAGAGCCAGCTTATTGCAATGATCTTGTGTTTTCTGTTAGTACAGAAATATACAATGGCACCTTGGCATGTGGCTGTAATGCTTTTGGCACTGTACCAGGGTCAGAATGTAAAAATTATGGCGGACAGTGCTCATGTCATCTGGGTGTGGTGGGTCGAACCTGTAACTCATGTGATGTTGGTTTTTATGGATTCTATTCTGCTGGATGCAATACCTGTCAGTGTTCAAGTCAAGGGTCTCTGGAAATTGCTTGTCATGAGGTTACTGGGCAGTGTCACTGCAAGGACAATGTTGAAGGCTTGAAGTGCAACAGCTGTAAACCTGGTACGTTCAACCTGGACAGCACCAATCAACATGGATGCTTGCACTGTTTTGGCTATGGGCGCGCTGTCAACTGTACGTCAGCCAATGGATTTGTTGCATCAACTACTACAAGTCAATTTGTCAATGAAACAGTGTTTAACTGGACTGTTGTAAacagcacaggcagcccagttGCATTTGCTGCCTCCTCATTCAATGGAATGGTTGTCACCACCCCTGCATCAGCATCTATGGTCTACATAGCAGCACCTTCTTTGTTCCTTGGCACCCAGTTTAGGTCTTACGGTCAGCGTCTTCATGTCAAAATGGAAATACGAGATCCTCGTAACGGTCAGAACCCATTCCGGTCAAACGCTGACGTCATCTTGGCGAGTGGACCCAAAGAAGCGGCGCTGAACCTTGTACCCTCACCGTCTCCCAACGTTACATCCTATCACGTGATTCTAGACGAACTGCACGTGGTCAACAGGGCCGCCTCACCGCTGGAATTCCAGTCCATTCTGGCCGAGCTGACTTCCCTTAAGATTCGTGCGACATACTACTCACACGGGAGCGTGACATTCAAGGAAATCACCCTAGAAACAGCCGTGAGAGGCTTGGGTACATCGGGAGAAATGAAAGTTGGATTTGTAGAAAACGCGACTTGTCACATGAACTACACGGGTCTGTCTTGCCAGAAGTGCGCACAGGgGTTTACTCGTGAAGTCAATGGCAGTGGCCTACTCGGTCGATGTGTGCTGTGTTCCTGTAATAACAGGAGTACACAGTGTGACGGGGAGACTGGTGTCTGTGCCAACTGCAAAGTAGGTACCTATGGGGACCGCTGCCAACTGTGTACCAGTAATGTTCGGGGACCGGAGTGCAGTCGATGTGAAACCGGATATTGGGGGCTGTCAGTGAATGGCTGTCAAGCTTGTCACTGCTACACCCCTGGAACAATCTTTGGCAACGACACGTCGTGTGACCAAGTGACGGGTCAGTGTAAGTGTAACGCAACAGCTAACATTGGCGGAAGGCGTTGTGATACGTGCAGGGAAAACAGCTGGAATACGTCAGCTGTACTGTTCAACTGTAAAGAATGTCCTACATGTTATTCGTCTGTTGAAGAGGACGTGAATTTGCTGCGAGTCCATATTTCGAGCTTGCAAGTTCAACTCTCGACCTTCCTAAACCAACCCTCGATGCTCCACAACCGCACATTTGTTGAACGCTTGCGTCAGCTTGTCAGAGAGATCAGTGGACTCACACAAACAATCAACGCTGCCCAAGAGGCAAACAGTAACTCGACAGCTCAATGGCTCTTATTTTCTGTGGCTATGAACGATGTAAGTGCTGTGTTAAACGAAACGATAACAATTTGGGTCAATCGAACGCTCCACTCCACGGCCGTTGTGGAAGGTAATAAGAGGGAGACTGAAGCCACCGTGACAGAGATACAGGGTATCGTGACTGAGGCGTCACATTTCTTGGAAACTGCAATTGGTCCGAAATTTAAGCAGGCGGAAACTACATCCAATTCCCTTGCGAATCTAGCAGGACAGTTAGCGAATCTTAAACACAGCATCAAACTAGAAGAAAACCGTACTGTTCTGGCGAAGAAAACAATTCGTTCACGTGTGGAACACGCGGTGGAGATTGCGAATAAGTCCGCTGAAATGGCGCGAAATGTTACCGACACGCAGGCTCATGTTGCTGCTTTGTTGCGCCAGCTGCAAGAGAACGCTTCTGCGGCACATGTTCTCGGAGAGCGGACGGTGGCGATGGCGTCTGACATGCTGGCAACGGCAAGCAGAGCATATGATCACAGCTTACAGAAGTTGAACGAGACCAGTCAAGCAAACCCCAATAGAAGTGGACTTTTGGAAGACATGAAGAGGGAAGCAGCCATTGCAAGGGATCTCTCTTCGCAGTACCACAGACAAGTCAGCGATTTATACCAATCAAGTACTGCTGTTATCAACCAGGTCAACGCAGCCATTGAAAGATCAATAGTCCAGGATGAGGAAGTACAAGCCGTGTACAACAATGCTTCGCAAGTCCATCAAGACTCCGACGCTACATTGACTGCTGCCCAGGCTGCTGTTTCAAGAACTCGCCGCTTGCACAATCAAGCGCAAAGGATGTTGCAGGTCGTGCAAAATTTTGAGAATGAATCTCTTCAGGCGCAGGCTTCTGCTAACAAGGCTTTGTCGGGTATTCCTCGTATTCGGAACACCACGCACGAGATTATAACGGAAGCATCCATGGCAAACGAGTCGTCTGCAAACACGCTTTCCACAGCTGCAGAGGCCTTGCGGCTTGGAAGCAAGGTTCACAATCTTTCTGTATCCGAGAAGGAGGTTGCAGAGAGAGCTCTTCGTCTTGCTAACCAGTTAGACAACGAAACTTCAACAGAGGACCCGATGATGAACAACACTGTGGAAAATTTCATAGTGAGAGAAATAGAACCAGTGCTGAAGCTCTGCCAAAACCTCTCTACTATGGCTTTCAATGCGTCCAACAACAGTTCAGCCCTCCTGAGGCGAGCCGTTTATATAAATGCCACTGTCCAGCGGCTGGGTGTTCTAATAAGGCGCTTGCTCAACGAAAGCTCTGATTTGCCCCGAGTCAGTGCCAACAATCTTCCTACTCTCAGGGGAGAAGTAAGCTCAGCTAGACAGCTGTTTGAGGCGTTACAACTCGAGCCGCATTTGGCGGAGTTAAGGAAAGGAATTCAACTGCAGAAGGAGAAGATGGTTTTGTTCAAATCCCGGATTCGTCAGCTCCGATCCGATGTTGACGAAAAGAAGAACTTGTTGTTGTCGGTACCATCGGAGAGCCCGTGTTGA

Transcript

BRAKERYMET00000013622

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P15800	Laminin subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Lamb2 PE=1 SV=1
Q61292	Laminin subunit beta-2 OS=Mus musculus OX=10090 GN=Lamb2 PE=1 SV=2
P11046	Laminin subunit beta-1 OS=Drosophila melanogaster OX=7227 GN=LanB1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001807 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF00052 all species →	Laminin_B	Laminin B (Domain IV)	Domain	Interproscan
PF00055 all species →	Laminin_N	Laminin N-terminal (Domain VI)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR012510 all species →	Repeat	Actin-binding, Xin repeat	Interproscan
IPR000034 all species →	Domain	Laminin IV	Interproscan
IPR008211 all species →	Domain	Laminin, N-terminal	Interproscan
IPR013015 all species →	Domain	Laminin IV type B	Interproscan
IPR050440 all species →	Family	Laminin/Netrin Extracellular Matrix	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10574 all species →	NETRIN/LAMININ-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0005604 all species →	Cellular Component	basement membrane	Interproscan
GO:0008045 all species →	Biological Process	motor neuron axon guidance	Interproscan
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0009888 all species →	Biological Process	tissue development	Interproscan
GO:0016358 all species →	Biological Process	dendrite development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000013622.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.