Detailed information of BRAKERYMEP00000013900.1 in Astreopora myriophthalma

Genomic Location: BLFK01000386.1:427802...491589
NR annotation: CAH3028161.1, unnamed protein product [Porites evermanni]
Species Astreopora myriophthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B3EWZ3Coadhesin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
D3ZTD8Semaphorin-5A OS=Rattus norvegicus OX=10116 GN=Sema5a PE=1 SV=1
Q62217Semaphorin-5A OS=Mus musculus OX=10090 GN=Sema5a PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000808 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00084
all species →
SushiSushi repeat (SCR repeat)DomainInterproscan
PF00090
all species →
TSP_1Thrombospondin type 1 domainDomainInterproscan
PF02494
all species →
HYRHYR domainDomainInterproscan
PF14670
all species →
FXa_inhibitionCoagulation Factor Xa inhibitory siteDomainInterproscan
PF00652
all species →
Ricin_B_lectinRicin-type beta-trefoil lectin domainDomainInterproscan
PF00754
all species →
F5_F8_type_CF5/8 type C domainDomainInterproscan
PF07699
all species →
Ephrin_rec_likeTyrosine-protein kinase ephrin type A/B receptor-like DomainInterproscan
PF12662
all species →
cEGFComplement Clr-like EGF-likeDomainInterproscan
PF07679
all species →
I-setImmunoglobulin I-set domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000436
all species →
DomainSushi/SCR/CCP domainInterproscan
IPR000884
all species →
RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan
IPR003410
all species →
DomainHYR domainInterproscan
IPR000772
all species →
DomainRicin B, lectin domainInterproscan
IPR000152
all species →
PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR036383
all species →
Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR006585
all species →
DomainFucolectin tachylectin-4 pentraxin-1Interproscan
IPR008979
all species →
Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR000421
all species →
DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR011641
all species →
DomainTyrosine-protein kinase ephrin type A/B receptor-likeInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR036179
all species →
Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR052065
all species →
FamilyComplement and asymmetry regulatorInterproscan
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan
IPR035976
all species →
Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR035992
all species →
Homologous_superfamilyRicin B-like lectinsInterproscan
IPR026823
all species →
DomainComplement Clr-like EGF domainInterproscan
IPR003598
all species →
DomainImmunoglobulin subtype 2Interproscan
IPR009030
all species →
Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR001881
all species →
DomainEGF-like calcium-binding domainInterproscan
IPR013098
all species →
DomainImmunoglobulin I-setInterproscan
IPR003599
all species →
DomainImmunoglobulin subtypeInterproscan
IPR018097
all species →
Conserved_siteEGF-like calcium-binding, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22906
all species →
PROPERDINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06825FBN1; fibrillin 1-Glycosaminoglycan binding proteinsko00536deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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