Genomic Location: BLFK01000386.1:427802...491589
NR annotation: CAH3028161.1, unnamed protein product [Porites evermanni]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000013900 |
| Transcript |
| BRAKERYMET00000013900 |
| Protein |
| BRAKERYMEP00000013900.1 |
| UniProt accession | Description |
|---|---|
| B3EWZ3 | Coadhesin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1 |
| D3ZTD8 | Semaphorin-5A OS=Rattus norvegicus OX=10116 GN=Sema5a PE=1 SV=1 |
| Q62217 | Semaphorin-5A OS=Mus musculus OX=10090 GN=Sema5a PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000808 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00084 all species → | Sushi | Sushi repeat (SCR repeat) | Domain | Interproscan |
| PF00090 all species → | TSP_1 | Thrombospondin type 1 domain | Domain | Interproscan |
| PF02494 all species → | HYR | HYR domain | Domain | Interproscan |
| PF14670 all species → | FXa_inhibition | Coagulation Factor Xa inhibitory site | Domain | Interproscan |
| PF00652 all species → | Ricin_B_lectin | Ricin-type beta-trefoil lectin domain | Domain | Interproscan |
| PF00754 all species → | F5_F8_type_C | F5/8 type C domain | Domain | Interproscan |
| PF07699 all species → | Ephrin_rec_like | Tyrosine-protein kinase ephrin type A/B receptor-like | Domain | Interproscan |
| PF12662 all species → | cEGF | Complement Clr-like EGF-like | Domain | Interproscan |
| PF07679 all species → | I-set | Immunoglobulin I-set domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000436 all species → | Domain | Sushi/SCR/CCP domain | Interproscan |
| IPR000884 all species → | Repeat | Thrombospondin type-1 (TSP1) repeat | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR003410 all species → | Domain | HYR domain | Interproscan |
| IPR000772 all species → | Domain | Ricin B, lectin domain | Interproscan |
| IPR000152 all species → | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR036383 all species → | Homologous_superfamily | Thrombospondin type-1 (TSP1) repeat superfamily | Interproscan |
| IPR006585 all species → | Domain | Fucolectin tachylectin-4 pentraxin-1 | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR000421 all species → | Domain | Coagulation factor 5/8 C-terminal domain | Interproscan |
| IPR011641 all species → | Domain | Tyrosine-protein kinase ephrin type A/B receptor-like | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR036179 all species → | Homologous_superfamily | Immunoglobulin-like domain superfamily | Interproscan |
| IPR052065 all species → | Family | Complement and asymmetry regulator | Interproscan |
| IPR007110 all species → | Domain | Immunoglobulin-like domain | Interproscan |
| IPR035976 all species → | Homologous_superfamily | Sushi/SCR/CCP superfamily | Interproscan |
| IPR035992 all species → | Homologous_superfamily | Ricin B-like lectins | Interproscan |
| IPR026823 all species → | Domain | Complement Clr-like EGF domain | Interproscan |
| IPR003598 all species → | Domain | Immunoglobulin subtype 2 | Interproscan |
| IPR009030 all species → | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR013098 all species → | Domain | Immunoglobulin I-set | Interproscan |
| IPR003599 all species → | Domain | Immunoglobulin subtype | Interproscan |
| IPR018097 all species → | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22906 all species → | PROPERDIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06825 | FBN1; fibrillin 1 | - | Glycosaminoglycan binding proteins | ko00536 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |