Gene detail

Detailed information of BRAKERYMEP00000014664.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029196092.2, probable ATP-dependent RNA helicase DHX34 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000014664

ATGTCAGAAATCTCCGCAGTTGTTGACGCCGCAAGGGAGTATGCACAGCGGACTCGCCGGTGGATCATTTTGCCGCTTCATAGTTCGCTATCGGTGGAAGATCAGGACAAGGTATTTGATGTTTCTCCAGAAGGAGTGCGGAAATGTGTAGTGGCCACTAACATCGCTGAGACTTCCATCACAATTGATGGAATACGATTCATAGTTGACTCTGGAAAGGTTAAAGAGATGAGTTTTGATCCTGAGGCTAAAATGCAGCGACTCCGTGAATTCTGGATTAGCCAAGCAAGTTCTGAACAGCGAAAGGGGAGAGCAGGTCGCACGGGTCCTGGTGTGTGCTTTCGTTTGTATTCCGAGAGTGATTATCACGCCTTCTCACAGTACACCACTCCTGAGATACAACGCGTGCCTCTGGACTCTATTATCCTACAAATGGTTTCCCTGGGCGTTACTCACGTACGAGAGTTTCCGTTCATTGAACCACCCCCTGCCTCGAACGTTGAAAATTCAATCCACTTTCTCAAGCAACAAGGAGCGTTGACAGACAGTGAGAACTTGACTCCCATTGGCCAGATGCTGGCTCAACTGCCCGTCGATGTCGTCATTGGAAAGATGTTGCTGATTGGTTCAGTGTTTCACATGATTGAACCCGTGATGATTATTTCCACTGCTCTTAGTGTCCAGTCTCCTTTCACTCGAAGACTGGATCATGACCCAGATGTGACGTCACTGAGACAGCCCCTGGAATCTGATCATGGCGACCCCTTTACACTCCTGAACGCCTACGATGAATGGTTGCAGATCAAAAGCCGGGAAGGTTCTTCGCGAAAGTGGTGCAAAAGACGAGGTCTCGAAGAACAGCGATTCTACGAGATGTCGAAGCTCAAGCGACAATTCGAACAATTGCTGCAAGATCATCATTTGCTGGATCCCCAGGGACGGGACGAAGACGACGATGACTTCGAGCGGGACCGGGAGGAAGACAAAAGGCGCCAATTGAAGAAACTCAAACGAGAGCACCGAAAGTCATCAAGGAAAACTAAAATGTTGAAGTTGGACGAAGACCAGGGAACCGGAAGTGATGAAGAACAAGGCACGGACATCCGGGATCTTGAATTTAAACTGACTCATGACCTTGACAAGCTGCAGGCCGGAAGTGCGGTCAGACGCAGCTTTACCCTGCGGGAAATCAATCTGTTGAAGATAATTCTTTGTAGTGGTCTGTACCCTAATTTCGCCATCCCTGATGAGGGAAATACATGGAAAAGGGACTCGGAACAGTTATTTCACAGTCACTCGAAGCAGTTTCTTCTTATGCATCCTACGAGTGTTTTTGCCACTCGTCCAGAGCTGCTTCAGCCCGCAGACGCCCCTCATCAATCGTCATCATCAAAGTCCCAAACCGAGTACTCGAGCTGCCACCAGTTGCTGGCTTTTGTTTCCCTTTTAGAGACCAACAAACCCTATTTGGTGAATTCCATGCGAGTGCCAGCCGTTCAgactcttttcctttttgcgcAGAACCTGGATACCAATGCCGACCTAACACGCGTTATTGTTGATACTTGGCTTGAAATCTGTCTGCCTGACGGTGCAGCAGGACAGAGAGTGCTAGCCGCTGTTCAGCAGCTCCGTGCTACGTGGGCACGCTTGTTAAAGCTTCGATTCGATACCAGCAGGGTCAATGGCAGGCTGGAGGGCCGCAAGTCTGCAACTCGACAAAACAAAGAACGTGATCTCGAGCATGTTTTGGCGAAGAAATTGTCAGAATTTCTGGATAGCGATGTACGGTACTCGCTTCGACGCCTTTTGCCTTCAGAAAGCCAGCATCTTTACTTCGGTCCTAATGGTCAAATTTCTCGTGAGGACGAAACTGAGAGAGTGCTCACGTTTGCATTTGGCTGTAATCCACACCCAATTAAAGGGGGCTTTTGTGTGAATGAATACCTGACCTACAATTGTCTCCAAGACACTGTAATGGCGGAGGCAGCCTCCGCCGCTGCTCAGTTCATCACTAAGCATTGGCGCTGCGAGAGGTGCGGCGAAAAAATGTTGGTGACTGTTTTAGAAAGGTTACAGCATCAGGAAGAATGCCATCAAGATGAGCCTACCGTTACGAGAGAGACAGCGGCTGTTGAACTTGCGCAATCGCAGATTGCAGACAATACAGCCAAGGTCGATTCTTCTGTTGAACGGTTACGAAGGTCGTATTACTGCCGCATTTGTGAACAGGAATTTTCTCTCACCAGTACTGAGATTTTGAAGCATAAAAAGTCACATAACAAGGGATAA

Transcript

BRAKERYMET00000014664

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DBV3	Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus OX=10090 GN=Dhx34 PE=1 SV=2
Q14147	Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens OX=9606 GN=DHX34 PE=1 SV=2
F4HYJ7	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana OX=3702 GN=At1g48650 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004451 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04408 all species →	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF07717 all species →	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF21010 all species →	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048333 all species →	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011709 all species →	Domain	DEAD-box helicase, OB fold	Interproscan
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000014664.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.