Gene detail

Detailed information of BRAKERYMEP00000014918.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015752941.1, PREDICTED: AP-2 complex subunit alpha-2-like [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VCK5	AP-2 complex subunit alpha-2 OS=Bos taurus OX=9913 GN=AP2A2 PE=1 SV=1
P17427	AP-2 complex subunit alpha-2 OS=Mus musculus OX=10090 GN=Ap2a2 PE=1 SV=2
P18484	AP-2 complex subunit alpha-2 OS=Rattus norvegicus OX=10116 GN=Ap2a2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003821 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02296 all species →	Alpha_adaptin_C	Alpha adaptin AP2, C-terminal domain	Family	Interproscan
PF02883 all species →	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003164 all species →	Domain	Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain	Interproscan
IPR009028 all species →	Homologous_superfamily	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Interproscan
IPR012295 all species →	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR013041 all species →	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR008152 all species →	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan

PANTHER

No PANTHER signature was detected for BRAKERYMEP00000014918.1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03681	RRP40, EXOSC3; exosome complex component RRP40	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.