Gene detail

Detailed information of BRAKERYMEP00000015345.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029198887.2, transient receptor potential cation channel subfamily V member 3-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000015345

ATGACGACAAATGGAAAGATAAACAAGAACAAAGTGATTCCAGTCCAACTAACAGTCGAGGAACAGCAAGATTTGGTTGAAGAAAACAGAGGTGCCCAAGCGTCTTCCGCGCCAAATAGCGAAGAAAAGGAGAGCCTCCAGAGTTTATCTCTAAGAAAAGTAAAGGTGGTTTCGCCATTAAAAACTGCAGGGCAAGCGAAACTAACGGTGTCAAAATGGAAGAGATTTGCAAGAAAACGGAGTGATATTTCAACTTGTCACCAATACCAGAAAGCGCGCATCGATTTCCCGACCATTCGAGAAAGTATGAGACCGAATCACCACCGCATGAATGCTGCGCAATTGAGTGATTTAGAAGAGCTTGTCGAGATAACATCACAAGAAAAACACAGGAAAGATGGAGGGGTATCTACCGTAAGCTCGCCAAGCAGAGCTCTACTGTATTATTTTGCCAAGTTGGCTGCGTCGACACGCGAAGAAGAGGTGATCGATTTGGAGTTTGTTCAAACCCTTATCGAAAATGGCGCGTCCGTCAATACAGCTGATCGACATGGGCAGTCTCTTCTACATGAGGCCGCCAGGCAGTGGGATCTATCTGTTGCTAAGCTCTTACTTGAACGAGGGGCAATTGTCAATCAGCCAGACAAATACGGCCGCACCCCGTTGCACGTGGCTGCAGCGGTTGATTATCCTGAGATGGTACAATTCCTGGTGCAGAGGGGAGCGGATATTCACGCAAAAACTGTCAAAGAGATGCAGACACCAATGCATTTTGCCGCAAGAAATGACGCGTCGTCGTCGCTGATGATGCTGATGAAATGTGGCGGTGACATAACAGACAAGGATTTCAAACAGAGAACAGCGCTCCAGgtGGCAGCGGAGTTGGATCGATCTGAGACGGCGAAATGCCTGATAGAGCGGTCAGCGGAGGCTAGTGTGGCTGATGACAGCGGCATGACAGCTCTTGTGCTGATGATCACCAAGATGCCCAATGTGGCCAAGGAAGCGCTCAATCAATTCTACTCAACAGACCGCGCCAACAGAAAGCAATACCTTTACCTCAACCACCTCGAACCTCCAGTGCCGACTTGCATGAGCAACGGTTGTGCTAAGACAGCACTCGAGGTCATCGTTCAGCTTAAGCAGTTTGATCTCATTATGCACCCTGTGATACAGAGACTTATCGCTGTGAAGTGGAATTACTTTGGAAAGCGAGGAGCTTGGGTACAAGTCATCACAAATCTGTTTTTCGTGATATTGTGGACGGTCCTCGGCGTGACGTCTCCACATAAGGCAAATGAATTTTTTAGTCCTATCGAAAACAAATGGTGGAGAGTTGTGTTGGGTGTCATAGCAGTACTCATGACGTTGAATTTCATCAGGCAGGAAGTCATGGAATACTTTGCTTCCAAGAGAGACCACAGACTCTGGGTAAAATGGCGGGAGGATGAACTACGGAACGATTTGGAGTTCTGTCATCCACGGTGGCCTGGAGAGAGATTATACCTTATGCAAGAAATTGACTCGTTACACCACCAGGAACCACCATATCTAAAAGACGCTTGGAACTTCGTCGACTGGCTTGCCTACTTCATGATTCTTGCATCCATAGCAACGCTTTTCATAGCTTATCTCAATGATGACCAAATGGCCTTGACAATTTACATTAACATTCTTTCTGTGACACTTGTGGTGCTGTGGATTCGTCTGATGAAATACGCACGCGCATTCACCGCCCTTGGACCCTTCGTAGTCATGCTGAGTCACGTGATATGCGATGTTCTTAAATTTGGCTTTCTGTTTTTCGCATTCTACATTCCTTATGCGGCTTCCTTTTGGATGATATTTAGTCAGCAAGGGATCGACGGGTATTCTGATATCACAGATCTTCTGTTCAGCATGTTTAGAATGACTATTGTAGATGAGTATAACTATGAAGGGTTGTCGCGAGCCAAGCCCATTATGGCGAAGGTGCTTTGTGGTACGTACATCGCTGTGTCAGGGGTGATTTGCCTCAATCTCTTCATTGCCTTGATGTCGGATACATTCCAGCGAGTTTACGACAATGTGAAAGCAAATGCTGTCATGCAGCAAGCCAGTACCATCCTCTCTTTGGAGAAAAGCATGTCCGTCTCAAAACGACGCGCCTTTACAAACTTCATCTACACGAGATGCAATCCCGAAGAATTGTACTACGACGATGATTCATCCGTGGGCGATGAAAAAGATTTGCAAAGAATGACGCACCAAATTAAGGAACAAGTAGACCACATCTACATGCAAATCAACGCGGAGCAGGATAATGAACGGAAAAAGAAGGGGAATGGGTCCTCTAATGATGTGCACAAACTGCGCGAGGATGTAAAGAAGTTAGAACAACAGCAGAGAGCCTTTTCAGCGCAGTTCCATAATCAGATCGCTGAGGTCAAAGATATGCTGGGTGATGTTCTTTATACTTTAGGGAAACGAAAGAGGAAAAAGCACTGA

Transcript

BRAKERYMET00000015345

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2A259	Polycystin-2-like protein 1 OS=Mus musculus OX=10090 GN=Pkd2l1 PE=1 SV=1
Q9P0L9	Polycystin-2-like protein 1 OS=Homo sapiens OX=9606 GN=PKD2L1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000428 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF08016 all species →	PKD_channel	Polycystin cation channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR024862 all species →	Family	Transient receptor potential cation channel subfamily V	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR013122 all species →	Domain	Polycystin cation channel, PKD1/PKD2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10582 all species →	TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0098703 all species →	Biological Process	calcium ion import across plasma membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04966	TRPC3; transient receptor potential cation channel subfamily C member 3	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.