Detailed information of BRAKERYMEP00000016244.1 in Astreopora myriophthalma

Genomic Location: BLFK01000436.1:271613...273495
NR annotation: XP_029213064.2, potassium channel subfamily K member 15-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8R5I0Potassium channel subfamily K member 15 OS=Rattus norvegicus OX=10116 GN=Kcnk15 PE=2 SV=1
O17185Two pore potassium channel protein sup-9 OS=Caenorhabditis elegans OX=6239 GN=sup-9 PE=1 SV=2
O35111Potassium channel subfamily K member 3 OS=Mus musculus OX=10090 GN=Kcnk3 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000112 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07885
all species →		Ion_trans_2Ion channelFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013099
all species →		DomainPotassium channel domainInterproscan
IPR003280
all species →		FamilyTwo pore domain potassium channelInterproscan
IPR003092
all species →		FamilyTwo pore domain potassium channel, TASK familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11003
all species →		POTASSIUM CHANNEL, SUBFAMILY KInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005267
all species →		Molecular Functionpotassium channel activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0071805
all species →		Biological Processpotassium ion transmembrane transportInterproscan
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan
GO:0015271
all species →		Molecular Functionoutward rectifier potassium channel activityInterproscan
GO:0022841
all species →		Molecular Functionpotassium ion leak channel activityInterproscan
GO:0030322
all species →		Biological Processstabilization of membrane potentialInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERYMEP00000016244.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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