Gene detail

Detailed information of BRAKERYMEP00000017156.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015753452.1, PREDICTED: exonuclease 1-like [Acropora digitifera]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W6K2	Exonuclease 1 OS=Xenopus laevis OX=8355 GN=exo1 PE=2 SV=1
Q9UQ84	Exonuclease 1 OS=Homo sapiens OX=9606 GN=EXO1 PE=1 SV=2
Q9QZ11	Exonuclease 1 OS=Mus musculus OX=10090 GN=Exo1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000453 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08797 all species →	HIRAN	HIRAN domain	Domain	Interproscan
PF00867 all species →	XPG_I	XPG I-region	Family	Interproscan
PF00752 all species →	XPG_N	XPG N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006084 all species →	Family	XPG/Rad2 endonuclease	Interproscan
IPR036279 all species →	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR006085 all species →	Domain	XPG, N-terminal	Interproscan
IPR014905 all species →	Domain	HIRAN domain	Interproscan
IPR006086 all species →	Domain	XPG-I domain	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081 all species →	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016818 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000017156.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.