Genomic Location: BLFK01000463.1:782138...815658
NR annotation: XP_044167139.1, LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000017547 |
| Transcript |
| BRAKERYMET00000017547 |
| Protein |
| BRAKERYMEP00000017547.1 |
| UniProt accession | Description |
|---|---|
| A5YKK6 | CCR4-NOT transcription complex subunit 1 OS=Homo sapiens OX=9606 GN=CNOT1 PE=1 SV=2 |
| Q6ZQ08 | CCR4-NOT transcription complex subunit 1 OS=Mus musculus OX=10090 GN=Cnot1 PE=1 SV=2 |
| A1A5H6 | CCR4-NOT transcription complex subunit 1 OS=Danio rerio OX=7955 GN=cnot1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002467 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04054 all species → | Not1 | CCR4-Not complex component, Not1 | Repeat | Interproscan |
| PF16415 all species → | CNOT1_CAF1_bind | CCR4-NOT transcription complex subunit 1 CAF1-binding domain | Repeat | Interproscan |
| PF16418 all species → | CNOT1_HEAT | CCR4-NOT transcription complex subunit 1 HEAT repeat | Domain | Interproscan |
| PF12842 all species → | DUF3819 | CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 | Domain | Interproscan |
| PF16417 all species → | CNOT1_TTP_bind | CCR4-NOT transcription complex subunit 1 TTP binding domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007196 all species → | Domain | CCR4-Not complex component, Not1, C-terminal | Interproscan |
| IPR032191 all species → | Domain | CCR4-NOT transcription complex subunit 1, CAF1-binding domain | Interproscan |
| IPR040398 all species → | Family | CCR4-NOT transcription complex subunit 1 | Interproscan |
| IPR032194 all species → | Domain | CCR4-NOT transcription complex subunit 1, HEAT repeat | Interproscan |
| IPR024557 all species → | Domain | CCR4-NOT transcription complex subunit 1, domain 4 | Interproscan |
| IPR032193 all species → | Domain | CCR4-NOT transcription complex subunit 1, TTP binding domain | Interproscan |
| IPR038535 all species → | Homologous_superfamily | CCR4-NOT subunit 1, TTP binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13162 all species → | CCR4-NOT TRANSCRIPTION COMPLEX | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000288 all species → | Biological Process | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | Interproscan |
| GO:0000932 all species → | Cellular Component | P-body | Interproscan |
| GO:0017148 all species → | Biological Process | negative regulation of translation | Interproscan |
| GO:0030015 all species → | Cellular Component | CCR4-NOT core complex | Interproscan |
| GO:0060090 all species → | Molecular Function | molecular adaptor activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12604 | CNOT1, NOT1; CCR4-NOT transcription complex subunit 1 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
