Detailed information of BRAKERYMEP00000017556.1 in Astreopora myriophthalma

Genomic Location: BLFK01000463.1:771016...777828
NR annotation: KAJ7383187.1, hypothetical protein OS493_030343 [Desmophyllum pertusum]
Species Astreopora myriophthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P63239Neuroendocrine convertase 1 OS=Mus musculus OX=10090 GN=Pcsk1 PE=1 SV=1
P63240Neuroendocrine convertase 1 OS=Mus cookii OX=10098 GN=Pcsk1 PE=2 SV=1
P29145PC3-like endoprotease variant B OS=Hydra vulgaris OX=6087 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000150 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16470
all species →
S8_pro-domainPeptidase S8 pro-domainDomainInterproscan
PF00082
all species →
Peptidase_S8Subtilase familyDomainInterproscan
PF01483
all species →
P_proproteinProprotein convertase P-domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036852
all species →
Homologous_superfamilyPeptidase S8/S53 domain superfamilyInterproscan
IPR022398
all species →
Active_sitePeptidase S8, subtilisin, His-active siteInterproscan
IPR008979
all species →
Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR032815
all species →
DomainPeptidase S8, pro-domainInterproscan
IPR000209
all species →
DomainPeptidase S8/S53 domainInterproscan
IPR023828
all species →
Active_sitePeptidase S8, subtilisin, Ser-active siteInterproscan
IPR023827
all species →
Active_sitePeptidase S8, subtilisin, Asp-active siteInterproscan
IPR015500
all species →
FamilyPeptidase S8, subtilisin-relatedInterproscan
IPR002884
all species →
DomainP domainInterproscan
IPR038466
all species →
Homologous_superfamilyPeptidase S8, pro-domain superfamilyInterproscan
IPR034182
all species →
DomainKexin/furin catalytic domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42884
all species →
PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004252
all species →
Molecular Functionserine-type endopeptidase activityInterproscan
GO:0006508
all species →
Biological ProcessproteolysisInterproscan
GO:0008236
all species →
Molecular Functionserine-type peptidase activityInterproscan
GO:0005802
all species →
Cellular Componenttrans-Golgi networkInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0016485
all species →
Biological Processprotein processingInterproscan
GO:0030173
all species →
Cellular Componentobsolete integral component of Golgi membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01349FURIN, PCSK3; furinEC:3.4.21.75
Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP