Gene detail

Detailed information of BRAKERYMEP00000017712.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044178744.1, semaphorin-5B-like isoform X2 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000017712

ATGAACACTAGCAGTTACAATTTACTTTCGGTTGATGAAAAGTACAATAACCTTCTTGTTGGAGCAAGAAGTAATGTTTTCTTGGTGAATTTAGATGATATGGACCATTATGCGAGGACAAATTTAAGTGATGCTCCTGGCAAAGATAAACAAGGAAATGTATTTAGCACGGTTGAAACATACGACGCACTGAGCTTAACACCTGACCAGAATGATACAGCCGTCATAACAGGGGATGGCATTCTGTTCATTGGGACTTTAGCGCCCAATGGAGACCGGGTCATTTACACCAAGCAGTTTAAGCAGCCCCAGCTGAGCACGATTTCTACCAATAACAAGGAAAGTACCTTCTATAATGAGGATGTTTGGTGGGACAACAGAACCAGGCaatttcatgcaattttcaCCTCACAACCCAATGCGCCCGCGTCGTCAGCTATTTGTATTTACAGTTTGTCATCCATCAACCGTGTTTTCGACGAAAGCTTTTATAAATCATTCAGAGATAACGAAGAACATTGGTCCAAGATAGAGAACAAACACAGAGAATATTTTCAGGGTTGCAAGGTGAATCCTAAATACCTCTCTGACAAATCTCCTGTTGCTGATGGCATGATGGCCACAGATAAGATGACCATTGCAGCATACACTCAGCTAAAGCAATCCGATCCCTTGATGGCTGACCCTGTACAGCCGGTGGGCCTTCAAGCATCGTTCATTAAAAATGGCGTCAGGATGACCAGCATTTCTTTGGACGACGTTGGTCCGAATACCGTGATTTACACCTCAACAGatCGGGGGTCTGTGATTAAAATTTCTCAACCTTCAGAGATTTCTCAACCTTGCCTTCTGACTGAAATGGAAGTGTTTCCAtctggCAAGAAAGAGGTGATTAAGAGTATGGTGCTTGACAAAAGTCGGCGCGTTCTCTACTTGGGATCACATTCCTCGCTTACAAAGCTGAGTTTGGAGCAGTGTCACCGATTTTTACATAAGAGtgcTTGCATTTCGGCTGCCGATCCTTACTGCGGCTGGGACGAGCAAACATCAAGATGTACTCTTGTCCTTTCCCATGGGATGTCAACTCGATTACAGCAAAACTTAACATCCTGCCCAAAGAATAAAAAAGTGAATTTGCCGATATGGACGACCTGTGTTCAGACTGACGGAAATCTTTGCCGATGTCAAGCCCGGCCctgccaagatggcggacaaaaCACCTCTTGCAATGGTGGCCTGGAGCTTCGACTAGAAAACTGTACAGTGGACTTGACCGTGGGCTGGGAAGGCAAAGAGGCATGGGAAATGTTTGGAGTCCAACATGGGAATTGGAGTGTGTGGGGAAACTGGAGCGAGTGCTCAGCAGAAGCCTGGGCGGGCGTAAAAAACAGATCACGAACATGCACCAATCCAGCCCCCAAGAGGGGTGGGAGACCGTGTGTTGGAGAAGCCGTGCAATATGAGCCATGTAGTCTTGGAATTCAGGAGGAACAGAAAAGTCTTTGGACAAATCCAACAAGGCTGTTTAATTCAGTGCTGAATATGGCTGTGAAGTTCAAAATGACTTCCAGAGCGAAAGGATACAAAATAACAGATTTGAGGTTGGAGCTGGCTAACGAGACAATTGACTGCGAGAAGGATGGAGAACAGTGCGAAGAGGGAAAATGGGACCCTTGGGGTGACTGGAGCCTGTGTTCGGGAGAAGGGTTTCAAATACGACGACGAAACTGTAAAGAAGAGCCGTGCATAGGAGAAAGGCTACAGGAAAGGAGCTGCAGTCCGGCAATTGATAACTGCAGTGCAGGTCGAGTGGATCTCACCTGGGACTCGTGGTCAAAATGTCTCTGTGCCCATGGTTTAAATCTGACTGAGGGGACTGGTGTGATGTACAGGGTTGCCATGTGCCACAGGGAGTGCTCCAACTTGGCCATTTGCACCGATAGCATTGAGTTCAAGTCGTGCAACTGTAAAAAACCTCCTAGTGTAGTGGGACGGCAGCGTGGAGATGGAGTGAATCCTGTAGGCCACTCTAACTTTGGGATAGGTCACGTGATTGGCGCCGCTCTTGTCGGCTGTGTGTTCGCCGTCCTTTTGTGCGTGGCCGCGATTTGTTACGTGAACCGCAAGAAGAAACAGTTTAATGTTTCCAAAACTGAGGACAGCAGCTTCCACGACACGGTTAGCCAAAGTAGGTTCTCGACGCTGCCTCGAGAGAATGGCGAATCTTTAACAGAGCCGCTATCGCCTTCCAGCAGAGGAAGCCGAGATAAAAACAGAAACACTAAAATCAAGATACCGCTCAGGATCTTGTTCCCCAAAAGGAAGAGGCCTTGTTCCACGGACTCCGTATAG

Transcript

BRAKERYMET00000017712

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P283	Semaphorin-5B OS=Homo sapiens OX=9606 GN=SEMA5B PE=1 SV=4
Q60519	Semaphorin-5B OS=Mus musculus OX=10090 GN=Sema5b PE=2 SV=2
O09126	Semaphorin-4D OS=Mus musculus OX=10090 GN=Sema4d PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001596 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF01403 all species →	Sema	Sema domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR027231 all species →	Family	Semaphorin	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001627 all species →	Domain	Sema domain	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR036352 all species →	Homologous_superfamily	Sema domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036 all species →	SEMAPHORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001755 all species →	Biological Process	neural crest cell migration	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030215 all species →	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335 all species →	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499 all species →	Molecular Function	chemorepellent activity	Interproscan
GO:0048843 all species →	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0071526 all species →	Biological Process	semaphorin-plexin signaling pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000017712.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.