Gene detail

Detailed information of BRAKERYMEP00000017764.1 in Astreopora myriophthalma

Genomic Location: BLFK01000476.1:830070...831254
NR annotation: XP_015779350.1, PREDICTED: RNA-binding protein 45-like [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IUH3	RNA-binding protein 45 OS=Homo sapiens OX=9606 GN=RBM45 PE=1 SV=1
Q8BHN5	RNA-binding protein 45 OS=Mus musculus OX=10090 GN=Rbm45 PE=1 SV=1
Q8CFD1	RNA-binding protein 45 OS=Rattus norvegicus OX=10116 GN=Rbm45 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006837 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034206 all species →	Domain	RBM45, RNA recognition motif 2	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034207 all species →	Domain	RBM45, RNA recognition motif 3	Interproscan
IPR034208 all species →	Domain	RBM45, RNA recognition motif 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012 all species →	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000017764.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.