Gene detail

Detailed information of BRAKERYMEP00000018327.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015772026.1, PREDICTED: NFX1-type zinc finger-containing protein 1-like isoform X4 [Acropora digitifera]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000018327

ATGGCAACCCAAGCACCACCGGAAGATTTTCGCTCTCTTAGCGTTATTCCAACCCGAGATGACATCATTACAGAAACGAGGCCCTACTTAAGGGAGAACAAGGTCAAGGGAAGATATGACAGCAAGGAACATTATTTAGACGTTCAGTTTCGGCTCTTTCGCGAAGACTTCATCAGGCCCCTACGCGAAGGAATCCAGCAGTTATTAGTCATGGGTAAACATCGCACCAGCAAAGACGATCGTTTGCTTGATGGCGTTAGAGTTTACGACGATGTTGAAATACTTGATACAGTTTTTACGGGAAATAATAATGGGGTTGCTTACCAGATCAGATTTGACGTTTCAAAGTTTGGTGGGATAGAATGGGAGAACAGCGATAGGCTGATCTTTGGATCACTGCTGTGCCTGTCAAAGGACAATTTTGAGAGCTTTGTTTTCGCCACAGTTACAAATAGGAAGAAAGAGGATATCGTGATGGGTGTGGTTGAAGTTCGATTTACGTCGCTTTCCAGTGAAGCTCGACCACAGACAGGTGACAAGTGTCAGATGGTTGAATCCGTAGCATTTTTTGAAGCTTACCGTCCAGTCCTGGATGCACTGCAAACGATGTCTTGGGGAAAATTTCCCTTCCAGAGATATGTTGTGGAGTGTCAAAACGAAGTTCGCCCACCGGCCTATCTAACAAAATGTGATGGTCAACAAGTGAAATTTGATTTCTCCCCTATTCTGTCTAGCAGCACTGATTCGTTTTTGATGAATTCCAGGCAGCCAATTGCTAGGAGTTATCTCGAGCAAAGAAGACTTGCATCTGCTGTCACAGTCTTGGATCCAGCTTCTTGGCCATCTGCACAGGATCTGGGATTAGACGATTCACAATTCAAGGCTTTGAAGTTGGCGCTAACCAAAGAGTTTGCTGTCATTCAAGGACCACCGGGGACTGGGAAGACCTTTATTGGTCTGAAGATTGCTGAAATTCTACTACACAACAAGAACGCGTGGGGTCAAGTGTCAAAGAGGGGAACTATCCAGAACGCGTGCCGTCAAGTGTCAAAGGGGGCACCAATCCTTGTGGTTTGTTACACCAATCATGCTCTGGACCAATTTTTGGAGGAAATCCATTCATTCCATGCTGAGGGAATTGTCAGAGTCGGAGGAAGAAGCCAAAGTGACGCGATGCAAAAGTGCAGTCTTTCCAAAATGAAGCAAAACATGCTTAAGGAGAAGCGGATACCAAAAGCCCTCATGATGAGATTTGGACGAATAAAGGATACCATGAAAGCACTCTCCGAACAGTACTCTAATCACCGCAgattggaaaagaggctgaaagaAAATGTCATTAGTGAGGATGAGCTGGCCGGATGTGCCACGAGCTTGACTCCTCAGCACCATGTAGCCCTGAAAAGCAGAACTGTGAAGGGACGCGGTATAATGTCATACTGGCTTGGTCTTCATGTGGAACCAGCTGACCCCTACAAAGGAGCATTTGCCTGGCCTCGTGTAATGTTTCCTTTCAACGCCGGTTGCTGGAACCTCGAGTATATTTCCCAAAGACTTTTAGCCTTTATGTCTCCAGATGTCCAATTGGCACCAGGCGCTGATGGCTCCCCTGGAGGTTCAGTTGAGCTTAGAGGACATTTTCACTCCTTTATCGAAATTCCAAACTGGGAAACTGGCGTCGCGGACGCTGGAGCATCGATTACCATATTGGCATTTATTTATCCTACTGGAGGTAGCGGGCCAATAATCTGCTATGAGAGAAATGGTTATGGCGTTCAGATATGGCTCGAACAAGACGGACTCCACCCTAACATGGGAACGCTATCGGTTTCGTTGATTCGAAGAGACTTGGCAGAAGTTTTCACGATGAAAAAAACCGTTTTACACATTAGTGCTTGGAATTACATCGGTGTTTCTTACGATCACACATCTGGAATGGCGCGCCTGTGGCACAATGGAAACGAAGTGCAAGCCAACTGCGTCGGTCCGAACTTTTACTTAGCCACACAGTTCCCTATTCGAATAGGTGCTTTGGCCAAGCTTTGGCAACCTACTTTCTTCACAGGAAGAATATCCCATCTGCATATCTATTCCGAGGCATTGGGGATTGAAAAAATTCGAGCAGTTGGATGTATTCCTCAGAAAGGATACAAGCTTGATGTGGAGTCGGTAGCCATGTCCACTAAAGAAGAGTTGGACAAGAGCAACAGAAGAGCTGCAAATGCAGCGGAGGGTGGTGATAATGAGGAGGAATTTGAAGGAGATACACAAGAGGACAACCAAAGGGCCCCTGACGTCAGATTTGAGGCTTACGTCATAGAGGAGCAGAGGATTCTGGacggtgatgatgacgacgagtCCGCGGTCGATGAGGCTGCGAACGACTCGTCGGATGATGATCTGATGAAGACAGCGAAAGGTGACAAAGCAGGCCTACAAGACAGCGGTTGGAAATTCCAAAATTCCACCCGCGTAAGGCATAGGATTAAGAAAATCATTCAGAGGGAACTTAAAAAGGAGGACTTGATGAGCAAAAAAGAAGCTTCGAAGGTTGAGGATGTGTGGAATTTATCAGAGAAAGATCGCTGGCGCCTGTATCGCAGATGGGTGCAAGATGCCTCCGAAACCTGTCACAGACGTATCACCAACTTGCAACTATGGTTTGATGGAGAGGccagcaaattaaaaatgttaaaggaagaagaagaattatATGCCCTTAAACACGCTGATGTCATCGGAATGACAACCACAgGTGCAGCACGGTATCACAACATTTTGCAGGCAGTACAGCCAGTGATTACAATCGTGGAGGAGGCCGCTGAAGTGCTGGAGCCTCATATAATTACGGCACTAACTCGGGGATGTGAACACCTGATTCTGATTGGTGATCATCAGCAACTGCGCCCCAATCCCACAGTCTACGAGCTTCAGATCAGGTACAACTTTGACGTGTCGCTGTTTGAAAGAATGGTAAACAACGAGATGGAGTTTGCAAGGCTGCGTCTACAACACCGAATGCGACCAGAAATCGCCAAGATGCTGGACCACATATACGTCAACCCGAAACTAGAAAACCATGATTCCGTATTGAAATTTGAAAGCATAAAAGGCTTGGAGCGGAACCTGTTTTTTGTGGAGCACAGCGAGCAAGAGGATTTTGTTGCTGAGGGCAAAAGCAGATCTAACGTTCACGAAGCTAAATTCATAACAGCTCTATGCCGTTATTTGATCCAGCAAGGCTATGAGCAGCGACAGATAACAATTCTGGCAGCCTACACCGGACAGCTCTCTAAGCTCAAACGCGAAATGTCGTCAAAAGACAAGAAGTTGTTTGACGGGGTTGGAGTAACAGTGGTGGAcaactttcaaggagaagaaaatgACATCATCCTTCTTTCCCTCGTCCGCAGTGACAGAATCGGATTCCTGAAAATCGCTAACAGAGTCTGCGTCGCTTTATCCCGTGCTCGAAAAGGTTTCTTCATCATCGGAAATGCCACGCTACTGGCTCGTGACAGTGACTTATGGAGGAAAATCTTTAGAGATATGCGAGTGCAAGGAACAATGGGAACAGAGTTGAAGCTTACCTGTCAGAATCATCCCAAAAACGTGATACAAGCATCGTGTGCTGACGATTTTGACGGCGCCCCAGAAGGAGGTTGTACAAAACCCTGTGGAATGAAGCTCAAATGCGGTCATACTTGTGATCATGTGTGTCACCCGATGGATCTTGAGCACGAAGAGAAATTCTCGTGCAGGCAGCCATGCTCCAAGATTATCTGTGATCTTGGGCATAAATGCCGTAAGTGGTGTGGCGAAATTTGTGGTCCTTGCATGGAGAGAGTAACAAAGGTCATTCCTGATTGCAAGCATGAGCAAAAAGTGCCATGTTCTGTGGATGCTGCTAGCTCCACGTGCAGGAAGATTGTGTCAAAGGAAGCGTCGCCTTGTGGTCACGTCAATCAAGAAGTGCAGTGTTCCCTAGTGCCAAGTGAAATCAAATGCAAAATGCCTTGTGGTGAATTAAAATGTGGTCACCAATGTGCTGGTCATTGCCATGAATGTCTACAAGGCCGCCTTCATTTACCATGCAAATCCAAATGCGAGCGCACTCTTGTCTGTGGCCACACTTGTCAAGATGACTGTACAAGTGTCTGTCCACCTTGTTCTGAGAAATGTCAGAATTACTGCGACCACCGTATGTGCAATCGGATGTGTGGTGATGTCTGTGAACCTTGTACAAACGAGTGCATCTGGCAGTGCCCGCATCACAAATGCACTAAGCCTTGCAGTGAACCATGCAACAGACCAAGATGTGAGGAGCCATGCCAAAAGAAATTACCATGCGACCACTTGTGTGTCGGCGTTTGTGGCGAGGAATGCCCCACACTCTGCCGAGTTTGCAACGAAGACGCTGACGAGTTCAAGGGATGTGATCCTCAAGCCATGTTTGTGGAACTGGCTGACTGCGGTCACATGTTCGAAGTCAAGACACTGGATGGTTTAATGGATCAGTGCGAGGTTGAAGGAGGGGAAAGGAAGGAAGTTGAGATCAAACACAAAAGATGCCCAAAGTGCAGTAAACCAATTCTGTGTAGTCGTAGGTATGGGAAGATCGTCAAGAAGATTCTTTCtgattttgaagctgttaagCGCCAAGTTGTCATCTCAGATGTTGCTGACAGTGACCAAATCAAGAATATTCTAATGACAGCTCAAGAAATCAAAGGGTTTAGAAATGATGCGAAGAAAATATTTGAGGAAATCACCCAGGGTTCTGTAACGTCTCAAGAAGAGGTCATCAAGCGGCAAAATCAAGTTCTCCTTTTAAAGTTTCTTGATTCTACATACAGTCTCGCGAAGGGTAACGAGTACAAGACACTCTTGAGCAAGATCTATTTTCTGGAGTCACGAGTGGTGAAAACAGTTGATTCCTTCACTGATCAAGAAATCGAAGAATTAATTGAAGAACTGTCAAGAACAAAGCTATTAGTCTGCTTTAAACATTTAATGACAAGCCTGGGACACAATTTCGTCGCTCTTAGTCCTGAGGACAACACGTGCGTCTGCTCCATACAGCGTGCTCTGGAGTCAGGAGAAGCAATTGCTCATCAGAGAAAACAAGAATCTATGACCGATATCTACAGGATCAAGAAGAAGTACGGATTGCTGGAGGCAGCGGACATGATTGATTCTGATTCAGATTTAACTGGGATGATTGCTAGGCCCAAGAACATTGCAAAAGGACCTTGGTACAAATGCAACAAAGgtaattttattaaaatagaccttttcgcgATAAAATCAACCATATTGGTTGTAGGGTAa

Transcript

BRAKERYMET00000018327

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2E3	NFX1-type zinc finger-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNFX1 PE=1 SV=2
Q8R151	NFX1-type zinc finger-containing protein 1 OS=Mus musculus OX=10090 GN=Znfx1 PE=1 SV=3
E9P860	NFX1-type zinc finger-containing protein 1 homolog OS=Caenorhabditis elegans OX=6239 GN=znfx-1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000257 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031048 all species →	Biological Process	regulatory ncRNA-mediated heterochromatin formation	Interproscan
GO:0031380 all species →	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27391	ZNFX1; NFX1-type zinc finger-containing protein 1	-	RIG-I-like receptor signaling pathway	ko04622	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.