Gene detail

Detailed information of BRAKERYMEP00000018494.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3110974.1, unnamed protein product [Pocillopora meandrina]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000018494

ATGTTACATCCAAGAGAGTCCGAAACTCGTCAAGTGAAATCTTTGGACGGAATGTGGGATTTTCGAGCGGATATTTCCTCGTCGGGGTTTGAAGACATGTGGTACTCCATGCCTTTGgcacagAGTGGAGAGGTCCTGTCCATGCCCGTTCCATCAAGCTATAATGACATCACAGAGGAACGCTGGCTCAGGGACTTTATTGGCTGGGTCTGGTACGACAAGCAGTTTTACGTGCCTCCTTCCTGGGTGGCAAGTAATAAAAGAGTGGTGCTACGGTTCGACAGCGTGTTCTACCGGTGCAAAGTGTGGTTGAACAATATAGAGATACTGGAGCATGAAGGAGGGGATCTGCCTTTTGAAGTTGATATATCAAATGAACTGACAAGAGACTCACACAGACTTACTGTAGCAGTCAACAATACTCTTTCATATATCGTAGAAGGGAATACTGCTAGGAACAGCAGCTCAATTTACAATTCGTCCTTCTGCGATTCAGCATACCATTATTCCACACTAATAGACTTTGCTGGAATTCATGGCTCCGTAATACTTTACTCTACTCCCACAGTACATATAAGTGACATCACCTATGCAACTCATCATAATTACCATAAAGCCACCATCAAATTTATTACGGAAGTTGGAGTTGACCATAGAGTGAAGAAAGATGCCATCATTATGAGTTACGAGTTGTTAGACAGCGAGGGGAAAGTGGCTGCCTTTACAGTTGGTGTCAAAATGCTCAGTGGAGAAATCACAGTGTTAAACCCCAAGCTTTGGTGGCCTGTTGGCATGAGCGACACCCCGGGTTATCTTTATACACTGAAGGTTGTAGCAACATATAAGGACATACGTGATGTGTACACACTTCCTGTGGGCATTAGGACCGTCCGCGTGGAGGGCTCCAGGTTCCTCATCAATAACGTGCCTTTTTATTTCAAAGGATTTGGTAAAGTACAGGATGGTGACATAAGAGGCCGAGGCTTTGATTACGCAGCACTAGTGAGGGACTTCAATTTGATGAAATGGTTTGGTGCAAATGCCATTCGAACTAGCAGGCATCCACTTCCCAAGGAGCTTCTTGAGCTCACAGATAAGCACGGTATCGTTGTTATAAATGAAAGCCCGCCTGTTGGACCAAGAGAGATGTTTAAgGGTTACATATCAGATCATACTATCAACCGGCATCTAGACCTAATGACAGAATTAATAAGACGTGACAAGAATCATCCTTCGGTAGTTATGTGGTCTGTGGCTAACCGTCGCTCGGATTCGTCCAGTGAAGATTTCCCGTTTCACCTGAGACGAATGATGGGATTTACTCGCGAGTTGGATATGCAGAGACGCCCTGTAACATACCTAATTTCGTCAGATTACAGGTTTGGAGTGATGGAAGACCCTGCGCTTGAATTCTGCGATGTCATTTCCTTTAGTCGTCACTATGGATGGTATTGGTACCCGGGCCAACCCGACCTCATAGCGAAGTCCTTAGAAGAGGATCTACGTAACCTGCACGAGATGTTTGGTAAACCAGTACTGATGGCCGAGTACGGCAGTAGTGCTGTTAGCGGAAGACATAAGCAACCATCGTTGATTTACTCCGAGGAATACCAGGTAGATACGATGAGGAGATATTTCCCCGTTTTTGATCGACTCAGAAACGAGTTTTTGGCCGGAGAAATGATCTGGACGTTTGCAGATTATAATGTTCTTGAATCTTTTGAGCTCATATCAGCCAACACCAAGGGACTGTTGACTCGGCAAAGACAACCAAAGGCGTCAGCGCATGCTCTTCGACAGAGATACCAGGCTTTGGTTATGGACGCGCATCCTCGATTCACTGGGGACGAGTTATTGGATATCCTTATAAGATTTAAGCCTCACCACGGTAACGAAGTCCATGCGTGCACATGGAATGTCAGGGTAACACAGCCTCCAGATGAAGACTTCAGAGCTTTCTTGCATCTAGACAATGATGAAGAGCTTCCAGACATTGTTGCTGTTGGCTTGCAGGAGGTCGATGCTAAACCCCAGTCACTGTTGATTGAATATATAAAAGAAAACTCTTGGGTGAAGATCCTGCAGGCATATCTTGGTGCTTATGGCCTAGTCAAGCTCAAGTCTATCCGCATGCTGGGAATGGTACATCTTGTTGCTGTTCACACAAGACACCTTCCGTATGTTCGAGACATAAGGCCTGGTTATTGCAAAACAGCCCTACTTGGACTTCTGGGTACAAAGGGTGCAGTGTCATTACGTTTTACTCTTTATGgacaaagcttttgctttattAACAGTCATTTCTGTGCACATGCTGAATataaagaacaaaggaatcTGGAATACCAGAGTATCAGTCAGAGTTTAATGTTTCCAAATTGTACACCACAGAAAGCTATGGATCACAGCTATGTGTTTTGGTTGGGTGACTTAAACTACAGAATCAATGAGACAGCTGAAAATATTAAAGGACTTTGTGGAAAACAAGAGTACTCCGCTTTGTGGCAGCATGATCAGCTCTTGCAAGGCCAGAAAGAAGGCAAATGCTTTGTTAACTTTCACGAAGGGGAGCTGAAGTTTCCTCCCACATACAAATACAGCCCAGGAACAAATGTTTATGACACAGAAAGTGGGAAATATCGTAAACCTGCCTGGACAGACAGAGTTCTGTGGAAAGTGTCTGATGAGAAGAAAGACTCTATTCATCCGGAATCTTATACCTCAGTGCAGTCGTACCTCACCAGTGATCACCGGCCTGTTGGGGCTTCTCTCAATGTGGACTTAAGTGACTCGATCTCGTCAATGGAGGACCCTATCTCTTGGAAGCCAGACCTTATGAGTCTTCCGTGGTATGGAAATGAAGATGGTCTGTGTGTATACGTTGTAAAGAATTACAAGACTTACAGTTGGGACTGGATTGGCCTTTACCGGGTTGGCTTTCAACACGTCTACGATTATGAAATGTACGAGTGGGCCGTGGGGGACGGGGACGAGTATGGCGAGAACGGCTGTGCGGTGTTGTTTGATTGCCTGCCTGAGGAAGCTGGTCATTATGTCATGTGCTATTACAGCTATAAACTGGACTGTATTATCTCCGTCAGCGACCCATTTGAGATTCTTCCACCAAGAGATGAAGACAAAGATCCAGTGGAGGTTCAAGTTGAACAACCCACGGAAGATGTGTAA

Transcript

BRAKERYMET00000018494

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12265	Beta-glucuronidase OS=Mus musculus OX=10090 GN=Gusb PE=1 SV=2
Q4FAT7	Beta-glucuronidase OS=Sus scrofa OX=9823 GN=GUSB PE=3 SV=1
P06760	Beta-glucuronidase OS=Rattus norvegicus OX=10116 GN=Gusb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005058 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02837 all species →	Glyco_hydro_2_N	Glycosyl hydrolases family 2, sugar binding domain	Domain	Interproscan
PF17751 all species →	SKICH	SKICH domain	Domain	Interproscan
PF02836 all species →	Glyco_hydro_2_C	Glycosyl hydrolases family 2, TIM barrel domain	Domain	Interproscan
PF00703 all species →	Glyco_hydro_2	Glycosyl hydrolases family 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036156 all species →	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan
IPR006104 all species →	Domain	Glycosyl hydrolases family 2, sugar binding domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR041611 all species →	Domain	SKICH domain	Interproscan
IPR000300 all species →	Domain	Inositol polyphosphate-related phosphatase	Interproscan
IPR006101 all species →	Family	Glycoside hydrolase, family 2	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR006103 all species →	Domain	Glycoside hydrolase family 2, catalytic domain	Interproscan
IPR006102 all species →	Domain	Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10066 all species →	BETA-GLUCURONIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004566 all species →	Molecular Function	beta-glucuronidase activity	Interproscan
GO:0019391 all species →	Biological Process	obsolete glucuronoside catabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01190	lacZ; beta-galactosidase	EC:3.2.1.23	Other glycan degradation	ko00511	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.