Genomic Location: BLFK01000490.1:2991579...2994782
NR annotation: XP_015758742.1, PREDICTED: diphosphoinositol polyphosphate phosphohydrolase 1-like isoform X1 [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000018497 |
| Transcript |
| BRAKERYMET00000018497 |
| Protein |
| BRAKERYMEP00000018497.1 |
| UniProt accession | Description |
|---|---|
| Q566C7 | Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Rattus norvegicus OX=10116 GN=Nudt3 PE=1 SV=1 |
| Q9JI46 | Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Mus musculus OX=10090 GN=Nudt3 PE=1 SV=1 |
| O95989 | Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Homo sapiens OX=9606 GN=NUDT3 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002505 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00293 all species → | NUDIX | NUDIX domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR047198 all species → | Domain | Diphosphoinositol polyphosphate phosphohydrolase-like, NUDIX domain | Interproscan |
| IPR020476 all species → | Domain | NUDIX hydrolase | Interproscan |
| IPR000086 all species → | Domain | NUDIX hydrolase domain | Interproscan |
| IPR015797 all species → | Homologous_superfamily | NUDIX hydrolase-like domain superfamily | Interproscan |
| IPR020084 all species → | Conserved_site | NUDIX hydrolase, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12629 all species → | DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016462 all species → | Molecular Function | pyrophosphatase activity | Interproscan |
| GO:0000298 all species → | Molecular Function | endopolyphosphatase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0008486 all species → | Molecular Function | diphosphoinositol-polyphosphate diphosphatase activity | Interproscan |
| GO:0034431 all species → | Molecular Function | bis(5'-adenosyl)-hexaphosphatase activity | Interproscan |
| GO:0034432 all species → | Molecular Function | bis(5'-adenosyl)-pentaphosphatase activity | Interproscan |
| GO:0050072 all species → | Molecular Function | obsolete m7G(5')pppN diphosphatase activity | Interproscan |
| GO:0071543 all species → | Biological Process | diphosphoinositol polyphosphate metabolic process | Interproscan |
| GO:1901907 all species → | Biological Process | diadenosine pentaphosphate catabolic process | Interproscan |
| GO:1901909 all species → | Biological Process | diadenosine hexaphosphate catabolic process | Interproscan |
| GO:1901911 all species → | Biological Process | adenosine 5'-(hexahydrogen pentaphosphate) catabolic process | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07766 | E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase | EC:3.6.1.52 | Enzymes with EC numbers | - | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
