Genomic Location: BLFK01000490.1:1292274...1296568
NR annotation: XP_015765033.1, PREDICTED: rho-related protein racA-like [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000018512 |
| Transcript |
| BRAKERYMET00000018512 |
| Protein |
| BRAKERYMEP00000018512.1 |
| UniProt accession | Description |
|---|---|
| P34147 | Rho-related protein racA OS=Dictyostelium discoideum OX=44689 GN=racA PE=1 SV=2 |
| O94844 | Rho-related BTB domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RHOBTB1 PE=1 SV=2 |
| Q03206 | Ras-related protein ced-10 OS=Caenorhabditis elegans OX=6239 GN=ced-10 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002672 (this species only) · gene tree & orthology |
| Transcription factor family | ZBTB · all TF in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|BTB · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00651 all species → | BTB | BTB/POZ domain | Domain | Interproscan |
| PF00071 all species → | Ras | Ras family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011333 all species → | Homologous_superfamily | SKP1/BTB/POZ domain superfamily | Interproscan |
| IPR000210 all species → | Domain | BTB/POZ domain | Interproscan |
| IPR001806 all species → | Family | Small GTPase | Interproscan |
| IPR005225 all species → | Domain | Small GTP-binding protein domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR003578 all species → | Family | Small GTPase Rho | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24072 all species → | RHO FAMILY GTPASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003924 all species → | Molecular Function | GTPase activity | Interproscan |
| GO:0005525 all species → | Molecular Function | GTP binding | Interproscan |
| GO:0005856 all species → | Cellular Component | cytoskeleton | Interproscan |
| GO:0007163 all species → | Biological Process | establishment or maintenance of cell polarity | Interproscan |
| GO:0007264 all species → | Biological Process | small GTPase-mediated signal transduction | Interproscan |
| GO:0008360 all species → | Biological Process | regulation of cell shape | Interproscan |
| GO:0019901 all species → | Molecular Function | protein kinase binding | Interproscan |
| GO:0030865 all species → | Biological Process | cortical cytoskeleton organization | Interproscan |
| GO:0031410 all species → | Cellular Component | cytoplasmic vesicle | Interproscan |
| GO:0032956 all species → | Biological Process | regulation of actin cytoskeleton organization | Interproscan |
| GO:0042995 all species → | Cellular Component | cell projection | Interproscan |
BRAKERYMEP00000018512.1.Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
