Gene detail

Detailed information of BRAKERYMEP00000018544.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029193630.2, putative RNA-binding protein EEED8.10 isoform X4 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000018544

ATGAATAGACTTTCTCCAAACTTGGACAAACTCAGAGCACTTCATCTCCAGGAACGTGTCGAAGGTCTATTTGCAGCCATCACTAATGACGGGGCACATGTTAAAGTGGGAAAACCCGCAACAGCTGTTGAAGATACTAAGGGCCATGAGAGTGCGATAAGCTCTTTTAAATCTAGAGAATTGCTTCAAAAAGCGGAAGTATTTTGTCGCCAAACTCGAGTTGCTGCAAATAAGTGTAAAGTGTTCGTTGGCAACGTGAGTTACAGGGTTAAGTCAAGACAACTAAAGGAATTTTTCAGCGCTTTTGGGAAAGTGATTTATGCAGAAATCGTAACGGAACATAAGTCAAAACGTTCTCGAGGTTTTGGATTTGTGACATTTAGCAACAAATGGGAAGCAGAGAGAGCCAAGAATTCTTCAGATGAAGAACGAACTCTAGAAGGAAGAGTCATGAAAGTCTGTTCAccagagagaaagaaaaaggGAAGGAAAGTATTTAGCCAAGACACCAGTCTAGAGGCAGCACTGGAATTCTATACTAAGAATGGTGGCAGCAACATTAACCAGGAATTAGATGATAGAATGGAAGATGAAGCTTGTGGCAGGGAAGTTAACAAGCTTGATTCTGAGTCACCAATATTTCAGCTTAACGAGTATACCATGCTTCacattttcttgtatttaaaaGTAAAGGATAGGGTACGAATTGAGAGGGTGTGCAGGAGATGGAGAGTGTTGGCTATTAAGTCATGGCATCACACCACCCATCTGGACTTCCAAGGAGCCTTTGCTTCATTCACAGGGCTTGGAGGTCTTACTGATGAAGTTCTGTGGTCCATTTTAAGACGAGGTTGCCAAAACCTCAAGTCCTTGGATTTGTCTCTTTCGCCTCACTTCTTGACTGATTTTGCAGTCCTTTGCATTGCCAAACAGTGCAAGTCATTAAAGGAGCTGAAAATCAGTGGAGTTGATGTCAGTACATCCTCATTAAAAGCATTGTCCAAAGGCAGTTCGAACCTGGAGAATATCAGCCTTCACAAGTGTTACAAAGTTGGTGAGAAAGCGCTCTGGTGGCTTTTTAAGGACTGCAAGAAACTGACTCATATCAATTTACAAGGAAACAAAAGTCTTAAAGGCCAGTGTTTCTTTATGCTGCCTCCAAGATGTGAAGATCTCTATCTGAAGGAATGTAATCAGTTGACAGATAAAGGAATGGTCCATCTTGGTGATAAATGTAAGAATTTGAAAAGCATCAACATCTCGGAGTGTGTAATGCTGACTGACGAGGGTATCCTTCAGCTCACACAGcactGTTGTATGATTGAGTCACTTCAGTTTTCCAGAGCCGGACATGATGTAACCAGCCAAGGATTGCAGAGCATTGGAAATTTAACATTACTGAAGGAGTTGGATCTCTCCAATAATTCTGTGGTAAATGACCTTGTACTGTACAGCATTGGAAGAAACTGTATTCATCTCGCTTCTCTAAATCTGGATTCTTGTCAAGAGGGAGTCACCAATGCTGGATTGCAGTGCTTAGTGTCTTGTTATCAACTGTCGTCTCTTGTCATAAGCTATATAGACAAGATAACCGATGAGGGTGTTATTCAGCTGGCCGCTAATGGCACCCTGGAGCAAGTAGTGGCTCGAGGGTGCACAGGACTCAGTGATACATCACTGGAGAGTCTGTTAAAACACTGCCGTAACTTAGCAGTCCTGGATGTTAGCGGCTGTACTGGTATCACAAACACCTCTCTTGAGCTGTTGACTTTGTACTGCGTGTCAGACGATCGGCCAGTTCTTACCTGCACGCTCGGAGGTACAGCAGTTGAGGAGGAAGAAATTTTTCGAGTGCAACCGGCGTTGTGTCAGTGTAAGCTGGTTCGTACTGACTTCTCCATTCCTGAAAGGACTGAGGCTGTGCCCTCATATGGCTCAGGTGCTTTCTATCACGAGGAAGACGAAGACGATGATGGCGAGTTTGAAGATGAGTTTGGCGATTTTgttgatgacgacgatgatgaacGCCTCGATAACGTTCTTCACGACGAGGAGACGTGGATGGCTGAAGACTCATTATGGTGGCGGCCTGACGACGCAGTGGATTTCCTGGAAGCTGATTATCCCTCCTTACTGGCAGAACAGCAGCACAGGTCATGA

Transcript

BRAKERYMET00000018544

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09299	Putative RNA-binding protein EEED8.10 OS=Caenorhabditis elegans OX=6239 GN=fbxl-3 PE=4 SV=3
W8E7I1	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2
Q9EPX5	F-box/LRR-repeat protein 12 OS=Mus musculus OX=10090 GN=Fbxl12 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003790 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000018544.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.