Gene detail

Detailed information of BRAKERYMEP00000019410.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015776615.1, PREDICTED: uncharacterized protein LOC107354646 [Acropora digitifera]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000019410

ATGGTGTTCAAGCCTGTTGAGGATGACGGGAATGGACGTCCCTTGATTCGTTTTCCAACAAGGAAGGCAGTCGTTAATTCGGACAAAGTCACAATGAAAACCATAGCAGTAGAAGTCACAAGAAGAGATGACAAAGACTACGAATGGAGTGATTTTAAAGTGTATGTTAGAGACGACTCGCAGAACAGTATGTGCCCTTTGTATCGGGATCACGACCCAGGAAACTTCATGACAGTTCACTTCAGCCACGCCGCTCCCTATGAGGCAGTGCTTAAGTTGCTAAAGAATGGCATCACACTGAAATATGAACAATCTCCTCAAGAATGTTATGTGTTCTTTGGTCACAGTGCCAGTCAGCTCAGAGAAAGAACTTGTGTATTATACAATGAGAAGCAAGGGAGTGTAGCGGACATCTTAAAACATTACGGAGAGTTTGAGAGGATCCCAGACATCGCAAAGAGAGCCGCTAGGATAGGTTTACTATTTTCAACTGCCAAGGCAACTTGTGAAATTCCTGATGAGAAAATTGGTGTTGTGGAGGACATTGAGAGAGACAAATACAACTTTACAGATGGATGTGGCTTTATATCAACAGAGTGCGCCAAACGGGTCACGGAAAACTTGAACATTGAAACATTGTACGAAGGTATAAAGTCACCCGAGTTTCCATCCGTATTTCAAATTCGGCTCAAGGGCTGCAAAGGAATCCTGTGCCATAATCCGAGGTTGAAAGAAGGCCTGCAAATCCGACCGTCGATGGAAAAGTTCAAGTGGAGCCGGAAGGGTCCGCATCCCCTTGGAATTGTCGACAAGGGATTTTCAAGACGAAACGAATTTGGTTCCTTAAACAAACAGTACATAATGCTTCTGTCAGCGCTTGGTGTCCCTGATAAGGCTTTCCTCCAAAAGCAGGAGGATTACTTCAAGGAACTTCAGGACATCACAAGAAATCATGACATCGCTGTAAAGTACTTGTGCATCGCTGGGGAGTTCGAGTTGGCAGAAAAACTGTTAAAGACTGGACGTATAGACCAAAAGATAAAACGGTCACTTGAACAATTTCGAAACCGAGTTCGAGAGCCCCAACAATCGAAACCAAATCCTttgcaaaaagtgaaaaaatcTGCCGCACAAAAGTTGAAGATTCCCATCGAAAAATCAAGAAATGTTTATGGCGTGTGCGATCCCTCTGGGACATTAAAACCTAAGACTGTCTTCTTTCAGCCAACAGTTCGAGGTCAACCGACTATTTTGAATGACATACAGGTTGTAGTTGCCAAGAATCCCTGTTATCATCCAGGAGACGTAAGGATTTTGCGTTGCATGGACGTTCCAGAATGCCACCACCTGGTCGACTGTGTTGTTTTTCCAACAGAAGGAAGAAGGCCTCATCCTGATGAGATCGCTGGAAGTGATCTCGACGGTGACAAGTTCTTTGTTTGCTGGGATGAGGATCTTGTCcccaaaaaagaagaaaatccgTGCCAGTATCCAGCAGCCAAGCCCAAGAAAAGACTGACTGATCCTTCAAGGGAGGATTTCCTGAAACATTTTGCAAGGTATAGCAACTCAACTGTAAGTAAACTCAATGCTTTGTTCGACAGATGGGCTGATGCTGAGGGAATCAATTCAACCCAATGCAAGATGGTCGCTGCTCTTTTTTCCCGCGCCATTGACGCTGCCAAGACAGGAGAACGAGTCCAAATCCCTCgaaacattttggaggcacctACGAAGAATGACACCAGTGACAAGTTCGTTTGGCAGAAACTCTTCCAGAGAGCCAAGCTATTTGAGACGGATCAAGCCATGGAGAATGCATTGCATGGAAACGTCGAAGCGTTTGATGAAGAGGACATTCTTGCACTCATCCAAAACCAAGAATCTCGTCTCAGTGAATACCGACTTTTTCGGCTTGTCTACAAATGGTGCCAACAATTTAACAAGGAAAGGGATATTACCCGCTACATACCGTACATCGACTTCACGAAGTTCAGTGAGAACCAACTCAGACGTTTACCCGCTGACATCCCAAACACTGACCTGGAGCCTCTTCTTAACCCTCTTCATCAATCACGAATTCTCTTGAAAGCTGACATCGACGCCTTGAAATTGGATCGAAGCCATGGGAGGCGTTGGCGACTTGTTTATAGAACAGATGGAGGAGAAATGTCCTGGAACGTTCTTTACAATGTCTTGTCTTCTCCTTTGGAAAAGTTGCTCGTGTTTCGCTTTCTGCTTGGAGGAATACAGTGGGCCATTTCATTGGCAATGTCAGTTCCTTTAAGTTCAGCTGAGGTTTTGACTTTAGAAAACGAAGATCCGCACAGTGCTCAATCGTTTGTTTCAGTGGATGTTCATTCGGGAGAACGGCATGTCTTAGATCTGAAGAGGGGTTATAGCTTCGCTTTGGAAGGACGACGACTAGATATCTACTCAGGAAAAAAGCAGAATACCTTCATCTGTCTGAGGGAAGATGAAAACGACCATGTGCCCATCATGAGTGTCGCGCTTGATCGATTCAAGTCGACGCTACCCCGCGACTATCAAACTCGACTCAGACGAGAACAGTTCCTGCAGATGGAGGTTTTCTGTGTGTATGATCACTCGGATCCTGGACAAAGGATTCGAAAAACGGAGCCCGGTAAGTCCCTGTGGAGCACAGATACCGATGTGAATGATTCCGAGAAGGCTGTCAGTGCTAGCGACAGCCTTGGAGAACACGCTACATTTATCGGCCGCGATGGTGATTTTCCAAGTCTCCACTGTGGCCCTGAGGCCCTGATCAGTGATTTCGAGAGAAATCTACTCACAATGCATGAACTGCTGGAGAAGGGTCAGCTACAAAACAGTCATGTGGAGGAAATGCATGACCGAATGATTTCACTAACGGATGATCAGGAGAAGCATCAAGTAGCGTGCCATTTAGAGTCACTTCTCTGGAAGGCCAGCGTCTCCTTAAAGACGTCCGAACAGTACAAGAATCTACTAATTTGCTTGTTAAGCGGGCTCCAAGAATTCAATGTGGACGTCGTCCTTGGTGAAAACGTGTCCATGGCACCTGTAACCCGTGTGAAACGATACCTGGACTCCTTGTGGAAAGGAACCGTATCGTTCACTGTGGATCAGTTGTACCAGATCGTAGATGCTGTGCTCCTTGGAAATGACTATGTCACTGGATGTCGCATCGTTGACGTCTTTCGCCAAGGATACGTACCACTGGAAGGTTTTACGTCTCACCCAAATGTCCTGCCGTACTTTCTTCATTGGATCTCACTGACAACACTCGAATCTCTGAAGGAGGTGGAACAGGCCGTCCTCTTATGTCACGGCCCCCATCCTGGTGAACGCATTAAAGCCCAGGCATTGGCGTGCGGAGAACAAGAATTGACCTTCACGCTGGTACTGACAGCTGGAAGCCAAACATTTCGTCCAGCAGACGGTGTCGCATTGAGTCGGTCGAGTATCTCTAGGCGTGAATACGTTGGTGAGGTAACAGCTATTGATGGAGTAATCCTTACTGTTACTATAGCGTGGCCCGCAGGTGCGGATGACAATTCAAGGAAGGACATCGTAAATGGGATATGGTGTCTCCACAAGTTTCCGAATTTTGTTGGATACCGACGGATTGCTGCTGCAATGAAGGCATTACTGGATACGACGTCCTGTGGTCGAGCCCTTTTTGAGGCGGTTGTTGGAAGCTTTTTCGTCAGTGAAACATCCAGCGAAGAAGCAAAGCAAGGGAACTATGCTGTTGCTGAAGGAACTCAGAACGCCACAGGTGTAGCGAACGCATTGAAGTCAGACGAAGACAAATCCTTGCCTTCCAGCACTTCATTTGTGCCTTGGGAGTCCGGAAACGAAAGCCAAAATGCTGCAGTTCGAGATGCCACTTGGAGCGAGTCTGTCATCACTCTCATACAGGGCCCGCCTGGCTCCGGCAAGACTGTCACTTGCGCAGAGATAGTACACCGCTGGCTGCTAAACAGCGAGGACCCAGTTCTTCTTGTGGCGGAGACAAACGAAGGTGTGGACAATCTACTGAAGAAACTTTTAGACCACGGCGTCAAACAAGAGAAGATGGTTCGTTTTGGAAGCTCTGGGTGGAAAGTAGCCAAAGAGCTGGAACCTCTAACGTTCGAAGTCAAGTATCGCCAACTTGTTTCTGACAAAAAGGACCGCAACAGAATCGATAGAAAGTTGGCGAAAAGGATTCTGCAGAGTTCTAAAGTCTTATGTACCACTTGTATCAGTGCAGGGTCCACGCTGCTTGATGGATTTCAGTTCAAACGAGTCTTGGTTGATGAAGCCTCACAAGCTACTGAGCCAACGATTCTTGTGTCTCTGTCACACGGTTGCCAAAAGCTTGTGTTAGTGGGTGATGACCAGCAATTGCCTCCCATGGTGTTGTGCGAGCTTGCAAAGGGTCCGAATCTTCTGTCAACATCCATGTTTTCTCGTTTACGGCAAGTAGGATTTCCAGTGCGCATGCTTGATATCCAGTACAGAATGCATCCATCCATTGCCTCGTTTCCTTCACGCCAATTTTACCATGGGAAACTCCAGAGCGGTGTGTCTGGGGAAGATAGAAAAGCACCCGAGGGTTTCAACTGGCCAAATAAGGACGTCCCTGTGGCTTTTCTCACCACACCCAATTCAGCGGAAGAGATGACCAAGGCGTCATCAAAGCAGAACGCTTTCGAGGCCAGACAAGTCTGCGAAATCGTTCTCGATTTGCTGAAAGCAAAAGACGTAACTGACGACAAAATCGGAATCGTAACGCCCTACCGAGCCCAGCTCAAACTTATCTCGGAATCGAAGCAGCTTCAGAACGTCTCAATCAGAACGGTGGACGGGTTCCAGGGCCAGGAGCGTGATGTCATCGTTTTCTCAGCCGTGCGATGTAACGAGCACGGGTATAAACACAGAGTAGAGAAAGGCCATCATCCAGAGGGAGAGGCAGAGGCAGAAGCCGAGGATCTCCATCAAAAGGACAAGGAAGAGGTCGAAGAGGAAGAAACTGAAACGCTGCTCATTACAGCTCACGCACATAGGCTTAAAATTACCTAG

Transcript

BRAKERYMET00000019410

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0DXS3	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2
Q7XM31	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1
Q9LQV2	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007661 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF05183 all species →	RdRP	RNA dependent RNA polymerase	Family	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007855 all species →	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079 all species →	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003968 all species →	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031380 all species →	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000019410.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.