Gene detail

Detailed information of BRAKERYMEP00000019413.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029200003.2, ankyrin repeat and zinc finger domain-containing protein 1-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000019413

ATGAGATCCACACAGACAATTTTGCCACCAGCTGGCTGTGAGTTGAGGGAGCATTTCAAGTTGGACTGGCACAGATTCAACCTGAAGCAAAAACTCACCGGGAAACCTGTTGTGTCGGAGGATGCATTTGAGGAAACAATTTCAGGTGAGATATCAAGCATATCAGGTTCCGATAGCGACACGGACACTGACAGTGACCTGATGCTGGAGTCAATTCAAAGCGCCAAGGCACCAGTCAATGATTTCCAGCTTGAAGAAAGGACTGTAACCAAGAAGAGATTGACAGGAAGACAGCACCCAAAGGTGTTATTTGTCAATGCAGATGGAGATGTACTGTCTGTGTATCGCAGTGTTTTGTGTTCCATGAAGAATGTCCCATCCAGTTCTGACGTTATGGTGTCATTGCTTGCAAATTTGCCAAAGTCGAGTTACTGGATTGTTCTAATGACTGCAGGAGGACACTTTGCTGGTGTGGTATTTAGgggaaaaaatgttttgacaCACAAGACTTTCCATCGATACACAGTCAGAGCAAAACGAGGAACTGCACAAGGTGCAAGAGATGCACATCAAGGTGGAAAGCAGCCGAAATCTGCAGGAGCAAGTTTGAGACGATACAACGAAGCTGCTCTTGTGCAGGAAGTTCAGGATCTCTTGGAGATGTGGTCACAGCATGTGGAGCAATGTGACCGAATATTCATCAGAACACCTGCTTATAACAAATCAATGTTCTTTGGAGGAAAAAAGCCTCCCTTGAAGAAAGaTGATGAGCGCATCAGAACGATTCCTTTTGCAACGCGGAGACCGACATTTAAAGAAGTCAAGCGTGTCCATCAAGAGCTGTCCAGCGTGCTGTTGCTAGGGAAGGAGAGTGATGCGGAACTTCAAAGACATCTTAAGCGGTTAACTCAAGCAAAAGCAGCGGAAAGTTTGCCATCGGTTGAAGAGGACCGGATTCAAGCATGGCAAAATGGTCAAAATACTGACGTAAATGATGAggagaaacaggaaacaaatttACTAGAAAAGGATGATAACAGAAAAGATGAGAACGCGGCTGTAAGGCGACCTCAAGAAACGtccaagaaaaacaagaagaaaaaaactaaaagcaaaaaactcggCGAGTTGGCGTTTCTCGGTGGAGACAAAGTTTCTCCAGAACAACATTTGTGGAACCGACTTTACTGTGCGGCTGTGTCTGGTAACAAGGAGGTTATATCATCCATCCTTGGCAGGAGTGCTGAAGGCGCAGAAGAAGATGGTTTACAACACGAAAGAATCTGTCTGCGCGAACAGGCTCACCAAGATTTGAACCGTGAGAATAGCGCCATATCAAACGCAGAAAAACTCTCCGAGTCTTCGGAAATGGCCGAGAATATTGAAAGGACAGATCAAATTTGCGAACGTAATAATAAAGGGAATACTATAGATGGTTCTTTCAAAGCCGATGATGGCCAAAATGGTATCGAAAGATCTACAAGTACTTGTAGAAATGAAAGTAATGGTGATGTGTCACCTGTTAGTATTTTAGAGGTGGTAAATAGACGCTTTGGCGAAGTTGGCGACACGCTTCTTCACGTAGCTTCGCGTTTTTCACAAATGGAAATCGTGTTAATGTTGCTTGAGAATGGCGCGGATCCCGCAGTAAAGGACGATAAAGGAAGACCGCCTTTTGTTGTCGCTGGTAGCAAGGAAATAAGAAATGAATTTCGTCGATTTATGGCTGCCTATCCAGACCGTTACGACTACGCCAAAGCGCAAatcCCAAGTGCATTGACACCAGAAATGGAAAGTGAGAAGGAAAAACGGAACGCGGAAAGGAAAAAAGCGCAAAGAAAAGCTCAGAAACAAAGAACTAAGGAGCAAAAAGCCGTCGAAAGAAGaagggaagaagaagaaaaagaaaagaaagcttttcAAGCATTAAGCGAAAGAGAAAAGGTATTGATTGCCGCGGAAGTTTTGATGAAAAGCGTCGCTTCTTCTTTTGCTAGCCGTAAAGAAGCATCGCAGTTTTTCGCTCAGTTTTCTCCTCGCTTAGCGTACGAAAAGGGAAAGACTGCTTACAGACTAAAGCCTGGGTGA

Transcript

BRAKERYMET00000019413

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58CQ5	tRNA endonuclease ANKZF1 OS=Bos taurus OX=9913 GN=ANKZF1 PE=2 SV=2
Q9H8Y5	tRNA endonuclease ANKZF1 OS=Homo sapiens OX=9606 GN=ANKZF1 PE=1 SV=1
Q80UU1	tRNA endonuclease ANKZF1 OS=Mus musculus OX=10090 GN=Ankzf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004911 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18826 all species →	bVLRF1	Bacteroidetes VLRF1 release factor	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR041175 all species →	Domain	VLRF1/Vms1	Interproscan
IPR047139 all species →	Family	tRNA endonuclease ANKZF1/VMS1	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16036 all species →	ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26089	ANKZF1, VMS1; ankyrin repeat and zinc finger domain-containing protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.