Gene detail

Detailed information of BRAKERYMEP00000019469.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044165984.1, PMS1 protein homolog 1-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000019469

ATGAATCTTTTGCCTCCGTCCACCGTAAGGCTCATCGCGAGTTCGCAAGTTATTACGTCTGTCAGCTCAGTAGTGAAGGAGCTCGTCGAAAATTCGCTTGATGCCGGGGCAACCAGCATCGAAATCAAGCTTGATGGATGGGGCTTGGAAAGGATTGAGGTTCGAGACAATGGCTGTGGAATAAAACAGGATGATGCGGCTTTTATTGCTCAGCCACATTACACTTCGAAAATATCGAGTGACACTGACCTGAAATCTCTTCACACTTATGGCTTCCGCGGTGAGGCTCTTGGCTCTCTTTCTTCAGTAAGCACTCTTTCTGTGTTAACAAAGACTGAGTTTGAGCAAGTTGGAATGTTGTACACAATTGGACGTAATGGCAAACTAGAAGCTACTCAACCTAAACCAGCTACTACTGGTACTACTGTCATGGTAACAGACTTGTTCAAGAACCTTCCCGTACGAAAACAGTTTTCTAGCAACAGTAAAAAGTGCAAAGATGAGTTGAGGAAAGTTGAGGATTTGTTGATGGCGTACGGCTTGATGCACCCCTCTTTGCGCATTTCACTGCGACATAATAAAGTAGTTGTTTGGCAAAAGAATAAAGTATCCAACCACAGAACAGCTTTATTGTCTGTCTTTGGAACAATGTTGTTGGCACAAATGGGTGCAATAGAATTCCAGGATGAACACGACACTGGTATTAATGTGGTTGGCTATCTGCCGAGGCCAGGATCTGATTTCGAGATCACTGGGCGAGCAGGAAATGatagatgttttgttttctttaatggAAGACCTGTGAACATGAAGCCCATATATCAGcTTATCAGGCAGTACTATACATTGTACAGTAGAGGAACAGCCACTGCATCAAACAAGTATCCCATAGCTTTTCTAAGCATTGAGCTGCCACCAGACAGCCTTGATGTGAATCTGGAACCCAACAAAACTAGCGTTATGTTGACAAACAAAGATGAACTTATTAGACTTCTGACAAGTCTGTTGGATGAATTTTATTCTGATGTTAAGAATAGGATCTCTGAAAGCAAAGCTACTGCTCCTGGTAATGTTACTGAAAATGGAACTGTGACTTCAAGGAATGGTTTGCTGGTGAATAAGGAGAATTATAATGGCAATGAACCAAAGGTTCAATGTTCAAGGAACTTCAGTGCTGTCAATGGCAAATCTTCTGACGTGGAACTCACTTGCATATCAAATGGTAAACACACTGTCAATCTATCAAATGGTAAGGAGAGCTGGCAGGAAACAAGTATATGTTCACTAGCAGATGGAAATGGGTCATTTGAAAATGCACAAAGAGGAGAACATAGCGAGAAAGCACAGAGTGATGACAGATGTTATTTGAGCAAACGTATGCTAAATGACACAAGCAATGATGCTAATCATTTGTCAAGAGAGGGAACATCATCCCAGAAACAATCAAAGGCAAATAGTCAAggcaaaaatacatgtacagacCATCACTCTCCCAACTCAAAAGCAGTAACAACACTTTTCAACAGACAAAGGGATATAGTTTCTCCTTTGTCTTGTGTTCAGCCAGATGAGACAAATACTTTACCCCAAGTAGACTCTTTTGTTGCAGGGTCTTTGGACTCTAATGCAGAAGTAACAGTGAGAAAAGTAAATAACTACACAGGCGAATCAGGCAAAGGCAAAGAAGACATGTCTTGTGGACCTTCTTTTGACAGTACAGAACTGTGTGAATTACTTAGTGATGAAACACTGAGTGAGGTAAGTGAGACTGATGTTGTGAACAAGGCAAGTTCCAGTTGTGTGACTGataataaaaaacatcaaaCAGTTGTTTTGTCAAGCGAAAATGGAGAAGATCAAATGAAAGCTGTTGATTGTAATGGGTGTTTGGGAAAATGTCAGAAGGTACTTGATGACAGCCTACGAATGTGTACTCCTTCCTCAAATAAATCTCTGGAGAAGTTGTTTTCACTCGACATGGATGACCTTTTTGATGATTCAGAGCTGGACATCACATGGGAAAAGTCTACCAATAAAATGTCACTGCCGTCAAACCATGTGACATCCTCCACATCCGACAAGAGTTCTGTTGCAGGAGACAAATCAGTGGCTACTCTCCCACATGCTGAAGATGAAGCTGAATGCAGTAACAAAGACTGGAGCAGGGGAAATGGAATTGTTGACAAGCAAGGAAATGTATTAGAGGTACAGGCTGTTTATTAcaatcattttcctttgtttgtcatGAAGATAATCATGTGTCATACTCAGCATTTTTTATGA

Transcript

BRAKERYMET00000019469

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54277	PMS1 protein homolog 1 OS=Homo sapiens OX=9606 GN=PMS1 PE=1 SV=1
Q941I6	DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana OX=3702 GN=PMS1 PE=1 SV=1
P54280	DNA mismatch repair protein pms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pms1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004912 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13589 all species →	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF01119 all species →	DNA_mis_repair	DNA mismatch repair protein, C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR038973 all species →	Family	DNA mismatch repair protein MutL/Mlh/Pms-like	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR013507 all species →	Domain	DNA mismatch repair protein, S5 domain 2-like	Interproscan
IPR014762 all species →	Conserved_site	DNA mismatch repair, conserved site	Interproscan
IPR002099 all species →	Family	DNA mismatch repair protein MutL/Mlh/PMS	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10073 all species →	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0032300 all species →	Cellular Component	mismatch repair complex	Interproscan
GO:0032389 all species →	Cellular Component	MutLalpha complex	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000019469.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.