Gene detail

Detailed information of BRAKERYMEP00000019510.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029199978.2, glutamate receptor ionotropic, kainate 2-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000019510

ATGTGCGCTCTGTGGGCGTTCATCGTATTGTGTTCCACGACCCTTTCACAGCTGGTACAGCCCTCTCATGCAGTGAATGAAATATTTATAGGGGCAATATTGCCGCCAACGGATCAAGGGATCAATGATACGGTGGAAGGGGAAGCTTTCAAACTCGCCATTGATCAAGTTAACGCGAACACAATTAATTACACAAATGTAAGGCTTCGAGGGCTGATACGGTACGCAGATCCATACGAAGACTTTGACAATATCGACAAAGTTGATGAATTGCTAAGGAGCAACATCTCAATCCTGATTGGTCCAATGGAGACATCAGCCGTCCTTGCAACTCATCCTCTTTGTATCAAAGCGCGTGTTCCTCAGATTGCTCCGCTGACCACTCTTCACCCGGGGTCCACGGAAACTCCGGGGACGAATTATTTGATTCGCATAAGCCCGAGTGAAGCACTGCGGGCAAAAGTGATTGCGAATATCGTAAAGCATTATGGGTGGAAGACGATGGCAGTTTTAGGATACAAAGACAAGGAAGCGTCCATAGGCCATTCCAGGTTTCGAATGTTTGCCTACAACCACGAATGGAATGTGGTAGCAGCAAGTCTCTTTCCACCTAACAAATCTGGGCGAGAGATCGTGCCAAGTCTAGCGTTCAAAGGGATCGACAAAGACGCCACTCGCCTCGCGATCGTGTTTTGTCCAGCCTGGGCTGTCAGGACGTTCATTAACCAGGCAAACGAGAGTAAAAAGTTAAGTGAGGACTTTGAAAGGTGGACGTGGATTTTTTCGGACTTTGGAAACCAGGAGAAAGATCTGTTAAAATCTCCTGGTGTTGTACCAAAGGAAATGCGTGGTTTGTTGGGCATCAAGCCAAGTTTTGCCAAAGGTGCTCGCTTTCAACAGTTCAAACAGAGCTGGAACTCTCGGATGCCGCACACAAATTTTACGGTGCCTGCAGGACGAGTTTACGATTCCGTGTTGGTCGCTGCTGAAGGAATAAAGAGGGCGCTAAACAGCGGGATAGATTTGTCGAAGCCTCCCATTTACTTGGGCTTCTGCGGTGATTTAGAGCAACAGCCGGAAAACACCAACGGAAAAGAGCTTGCAAGACACATAAACGaggtgATTGTGGAAGGTGTTATGGGTAGAATCCAAGTGAATAATTCAGATTCACCGGGTTCCTCTTTTTTCGACGTTGTGAATCTGAGAGCAGATGGTCAACACAAGGTTGGAGAGTGGAATGAAAGCGGCTTGCAAATGGATCCGAATAATAAACCGGTCTGGTCATCTGGCAGTACTAATAAACCGACAGACATTCCCAACATCCTCAGAGGAAAAACGTTAAAGATAACGACGATATTGGCTCCCCCTTTCGTGATGTCGACAAAGGGCAACGTGAACTCCAGGGCAAACGAGACTCAAGAATTCGAAGGGCTATGCATTGATATCCTGGAGAAGATGCGGGAAAATCTTGGTTTTAACTACAAGATATATCTCGCACCTGATCAAAAATATGGGGTGAGAGACAGACGGACTGAAAAATGGAACGGCGTTGTGAGTGAACTAATGAAGAAGAAGGCTGACATGAGCATAGCACCGATGACCATTAGTTCTGATCGCCAGGCAGTTATAGATTTCACGCAACCTTACATGACGTTTGGGTTGGCCTACGTAATACGTGTCAAAGACGTTCCGTCAAACTACTTCCGGTTCCTTTCGCCGTTTGATAAGTCCTTATGGATTGTGCTGTGCGCGCTAGTAATGGGGATGAGTGTATTAATTTGGACCTGTAGCATACTCAGTCCCTGGGGATATCACGGACGATGCCTGCAATCTGACTCCGTTGAAAAGATAGACCCGGAATACCTCAGAGAGGCTAACACCTTGAGCCTCTGTAATTCCATCTGGTCATCATGGAAGGCGTACGTGCGACAGGGAGCTGAACATCCCAACTCGTGGTCAGGGCGAATAACAGTATCCGTGTTCTGGTTTGCTGTCATGATAATCAATGCTACTTACACAGCCAATTTAGCAGCTTATCTCACTGTGTCCCGGATGCAGACCCCGATTGAAACCATCTTTGATTTGGCTCGGCAAACAAGAATTGAGTACGGTATCGTCAAGGATTCGCAGCTGCAAACGTTCTTTCAAAACACTGATGTTCCAAGTTATCAGGTGATGTGGCGGTTTATGGAGATGCACAAAACATGGATGCCGAGTTACGATGCTGCCATCAACAGAACCATGGCAGGGGATTTTGCTTTCATCTCCGATAGACCGATCCTTGAGTTCATGTCACGTCAAGAGAAGTATTGTGGAAAACTCAAGGTTACTGGAGGATTTGGAAATACGTATGGGTACGGCTTCGCTTTTCACCAGAACTCTTCATACACAGCGTTGTTTAATATGGAGCTGTTTCAGCTTCAAAAGGATTTTGTCATCAGCAATCTAATTCACAAgtggacaaaagaaaaagtgaaatgtgaaatggtgGACAAGCTTGAAGAGGAAAAGCAGCAGAATCAAGGTAGCAATGTTCAGAGGATGACGGTCGAAAGAATGCTGGGAGTGTTCATTCTGCTCGGCATTGGTATTGGAGTGGGATTTCTTATCATGATCATTGAGCGGGTTTACGCCCCAGCTAACGCAAAGGGCAAAAAGGATGGTGGAACCAGTCTCATTACTCAGGCCCAAGGCCTCAAGTTAAGGATACGCCTCTGA

Transcript

BRAKERYMET00000019510

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91755	Glutamate receptor ionotropic, kainate 2 OS=Xenopus laevis OX=8355 GN=grik2 PE=2 SV=2
A0A2R8QF68	Glutamate receptor ionotropic, kainate 2 OS=Danio rerio OX=7955 GN=grik2 PE=3 SV=1
P22756	Glutamate receptor ionotropic, kainate 1 OS=Rattus norvegicus OX=10116 GN=Grik1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009099 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan
IPR001508 all species →	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008066 all species →	Molecular Function	glutamate receptor activity	Interproscan
GO:0035249 all species →	Biological Process	synaptic transmission, glutamatergic	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0050804 all species →	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0098839 all species →	Cellular Component	postsynaptic density membrane	Interproscan
GO:1904315 all species →	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05313	GRIN; glutamate receptor, ionotropic, invertebrate	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.