Genomic Location: BLFK01000535.1:20789...30722
NR annotation: XP_029196380.2, protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like isoform X2 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000019599 |
| Transcript |
| BRAKERYMET00000019599 |
| Protein |
| BRAKERYMEP00000019599.1 |
| UniProt accession | Description |
|---|---|
| Q5XIN7 | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Rattus norvegicus OX=10116 GN=Pomgnt1 PE=2 SV=1 |
| Q5EAB6 | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Bos taurus OX=9913 GN=POMGNT1 PE=2 SV=1 |
| Q8WZA1 | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens OX=9606 GN=POMGNT1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000943 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15711 all species → | ILEI | Interleukin-like EMT inducer | Domain | Interproscan |
| PF03071 all species → | GNT-I | GNT-I family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039477 all species → | Domain | ILEI/PANDER domain | Interproscan |
| IPR029044 all species → | Homologous_superfamily | Nucleotide-diphospho-sugar transferases | Interproscan |
| IPR052463 all species → | Family | O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase | Interproscan |
| IPR004139 all species → | Family | Glycosyl transferase, family 13 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46396 all species → | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016266 all species → | Biological Process | O-glycan processing | Interproscan |
| GO:0030173 all species → | Cellular Component | obsolete integral component of Golgi membrane | Interproscan |
| GO:0047223 all species → | Molecular Function | beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity | Interproscan |
| GO:0006486 all species → | Biological Process | protein glycosylation | Interproscan |
| GO:0008375 all species → | Molecular Function | acetylglucosaminyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K09666 | POMGNT1; beta-1,2-N-acetylglucosaminyltransferase | EC:2.4.1.- | Glycosyltransferases | ko01003 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |