Detailed information of BRAKERYMEP00000019625.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029190315.2, F-box/WD repeat-containing protein 7-like isoform X1 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
C5FP68Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) OX=554155 GN=sconB PE=3 SV=1
A5DL92Ribosome biogenesis protein YTM1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=YTM1 PE=3 SV=2
D4AM37Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=sconB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009394 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF00646
all species →		F-boxF-box domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR050349
all species →		FamilyWD repeat LIS1/nudF dynein regulationInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001810
all species →		DomainF-box domainInterproscan
IPR036047
all species →		Homologous_superfamilyF-box-like domain superfamilyInterproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44129
all species →		WD REPEAT-CONTAINING PROTEIN POP1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10260FBXW7, SEL10; F-box and WD-40 domain protein 7-Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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