Gene detail

Detailed information of BRAKERYMEP00000019926.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3124894.1, unnamed protein product [Porites lobata]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000019926

ATGGAAGCGGGTTGTCGTGTAGTTCGAGGTCCAGATTGGAAATGGGATAACCAAGATGGCGGAGAAGGACACGTTGGAACAGTTGTTGTCGTCGGTAGAAGTGGAAGTGTATCTTCCCCTGATAAAACTGTCGTCGTCCAGTGGGATGGGGGAACGAGGACAAACTATAGATGCGGTTTTCAAGGAGCTTTTGATCTGTGTTTGTTCGATAATGGACCAATTGgtGTTTTGCATTCTAATGTTCCTTGTAACGAATGTACGAAGCAAGCTATTGAAGGAATACGCTGGGAGTGCTGTGACTGTGCCAACTACAACCTTTGCAGTTTGTGTTACATGAACGACAAACATCCACTCGACCATGGCTTTAGCAGAGTGGAAGCTCGTGGAAAACCTGGGGTTTTTGTAGGTAACAGACTTGGCAAATGCAAAGTTCAGGCCAGAGGTATATTTCCTGGTGCTAAGGTCAAGCGAGGACCTGACTGGGACTGGGGCAACCAAGATGGAGGTCCACAGAGCATTGGTCAAGTTTTAGATGTGAGGGGCTGGGAAGCAGAGAGCTTTCAGAGCGTGGCTTGTGTCAAATGGAAGCCTACAAGTACTAATGTGTACCGTGTTGGCCACAAGGGCAAGgTGGATCTGACATGTATCACTGATGGTATTGGAGGCTCTTACTACAAGAACCATTTACCAAAGCTTGGCCAAATGCCTGAATCACTGATTATTCCACCCTCAAGCAACCCAGCTGTCACATCGGCGGCTGATGCCGCGGCCACGTTTGAGATTGGTGAAAGGGTGCGTGTGCTGCTGAGTGGAGGTACTTTGAAGGACATGCAGGAAGGCCATGGGGGATGGAATGATCAGATGGAAGAGGTAATTGGTATAACGGGAACTGTTCATAGAATCACTGAGCGTGGCGACGTCAGAGTACAGTACCCTGGTTTTGCTAACAGGTGGACATTTCATCCTGCATCTCTTACAAAGGTTGTGGAGTTTCATATCAATGATAAAGTGCGAATCATGAATGATAAAGAACTGGTAAAAAGACTCCAGCGTGGGCATGGAGAGTGGGCAAATGAAATGACTGTGGCTTTAGACAAAGTTGGTCAGGTCTTAAAGATTTATTCTGATGGAGACATTCGAGTGGGAGTGGCTGGACATGACTGGACGTTCAACCCTGCAGTGCTTACAAAAGAATCATCCGCTGCTGCACAGCCAGGGGAGCTTGTTGCACCTCAAGGCAGACAAGCTGCAGCGCGCAATGAGCTGCAGGGAATCTTACAGTCATCCTCATCTACAACTTCATCGATTGCATTGCAGCGACAACAACTTGGTTATTCTCCTTTAGAGGAAAACAGGAACACTCAACGGCCTCAGAGAGAAATAGATGAATCATTAAGATCACTGATGGAGCATCTGCGGATCAACGGCTCAACTGATGTCGGATCCATGATTGTCAGTGAGGCAGGGCAAGGCCATGTTGACAAACTGAAAGAACTTTTAAGAGCCAATCGAGACAAGGTGGATATTGTTCGATCAGATAAGACAGCTCTGCAGATTGCCAGCCACCAGGGTTTCACTGTTGTTGTGGAGCTTCTTGTCCGATTGGGTGCATGTGTCAATCTGCAAGATACTGAAGGAGACACCGCTCTTCATTATGCAGCCTTCGGTAATCAGGCAGCGACAGCTGCTGCCCTACTGAAAGGAGGAGCAGACGGAAACaaacgcaacaaaaacaaatgctcTCCACTGCATGTTGCTGTTAACAAAGGTTACAGTGAAGTTGTCAAGACACTGCTGAGCTACTCGTGCAACGTTAACGCACAGgATTCTTATGGCGATACTGTTTTGCATGATGCCATTGCCAAAGACTTCTCCGAGATTGTTGAGCTTCTTGTAAACTTCAATGGAGTAGATTTATCTGTGAAGAATAAACGAGGATTTAACTGTCTTCATCACGCAGCTCTCAAAGGAAACGCTAGGGCGGTGTCACTAATAGTCAGTAAGCGTCCAGATCTGTTGAACGTTGTCAAAGAAGACGGATTCTCAGCCCTTCACTTGGCTTCATTAAATGGACATTTTAGCGTTGTAAAGTCTCTTATTGAGACTTGTCCAGACATTGATGTCAATCTTCGAAACGGTCGGCAACAGACTCCGCTCCTTCTCGCTGTTGATAAAAGGCACGTGACTATAACCAAGCTTCTCTTGGAAAACGGAGCACAGGTCAACTCCCCGGATGATGTTGGAGATTCACCACTTCATGTAGTCGTCATGTACCATTCCTTGAAGTCTGGAGGAAGCAATGTTGCAAAGAAAGAGttttctgcgAGTGAACCGACGTTTGTGATAACCAAGTTACTTATCGATCATGGCGCGGACATCAGCCAGAAAAATATACACAATAAAACGCCGGTGCAGCTGTGTAGAGATCCAAGGCTGAAGGAGATCTTACTTTCGAGATCGGACACAACAGCAGACTTGtcaaaaaaaacacttgaagtTCACACCCCATCCTCCGGGGATGTGACTGACTCGGCCCAGGCTAGCTCGACGCCAAAAGTTACCAGGGAAACCAACGTGAAATGTCGTCTGTGTGGCATTCCTGCTAACGCCAGATTTGATCCATGTGGTCACGTGTTAGCTTGCATGGAGTGCGCAGCAATGCTAAGGAAATGCTTTGTTTGTAAGGCTGTAGTTCAGTCATTCGACGAGATATCCCAGGGAGGGGAGAGCGAGGAGTCGCAGTGTGTCGTTTGTTCAGACGAGCCTCCCACTGTCAAGTTTGAGCCGTGTGGACACACGATCGCTTGTAAAGATTGTGCTGTGCGGATGAGGAAATGTTTGAAGTGTAAGAGAACTATTACAAGAAAAATATCAAATGGAGAAACATCTGCCCAGGTTGCAGAATTGAGCGAAAAAGACGAAAAATATCTGGAGACTCTTCACTCGCTGCTGTCCTTACAGGCACATGTCAGGGAAATCGAAGACGCAAACATGTGCGCCATATGTCTGGAAAACCCGCGCAATGTGGCTTTCATGTGTGGGCACGGCACATGCGCGAAATGTTCTTCTTCTCTGGAGATCTGTCCAATGTGTAGAAAACCCATCGAAAACAAGATTATGCTGTTTAATTGA

Transcript

BRAKERYMET00000019926

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIJ9	E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus OX=9031 GN=MIB2 PE=2 SV=1
Q96AX9	E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens OX=9606 GN=MIB2 PE=1 SV=4
Q68LP1	E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus OX=10116 GN=Mib2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000489 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF18346 all species →	SH3_15	Mind bomb SH3 repeat domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF06701 all species →	MIB_HERC2	Mib_herc2	Domain	Interproscan
PF13857 all species →	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR010606 all species →	Domain	Mib-herc2	Interproscan
IPR037252 all species →	Homologous_superfamily	Mib/herc2 domain superfamily	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR040847 all species →	Domain	Mind bomb, SH3 repeat domain	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24202 all species →	E3 UBIQUITIN-PROTEIN LIGASE MIB2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10645	MIB; E3 ubiquitin-protein ligase mind-bomb	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.