Detailed information of BRAKERYMEP00000019997.1 in Astreopora myriophthalma

Genomic Location: BLFK01000545.1:2296850...2399624
NR annotation: XP_044178200.1, uncharacterized protein LOC114961923 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O00468Agrin OS=Homo sapiens OX=9606 GN=AGRN PE=1 SV=6
P31696Agrin OS=Gallus gallus OX=9031 GN=AGRN PE=1 SV=3
A2ASQ1Agrin OS=Mus musculus OX=10090 GN=Agrn PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000984 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07648
all species →
Kazal_2Kazal-type serine protease inhibitor domainDomainInterproscan
PF00054
all species →
Laminin_G_1Laminin G domainDomainInterproscan
PF08685
all species →
GONGON domainDomainInterproscan
PF00092
all species →
VWAvon Willebrand factor type A domainDomainInterproscan
PF00050
all species →
Kazal_1Kazal-type serine protease inhibitor domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002350
all species →
DomainKazal domainInterproscan
IPR036058
all species →
Homologous_superfamilyKazal domain superfamilyInterproscan
IPR002035
all species →
Domainvon Willebrand factor, type AInterproscan
IPR001999
all species →
Conserved_siteOsteonectin-like, conserved siteInterproscan
IPR036465
all species →
Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan
IPR001791
all species →
DomainLaminin G domainInterproscan
IPR012314
all species →
DomainPeptidase M12B, GON-ADAMTSsInterproscan
IPR003645
all species →
DomainFollistatin-like, N-terminalInterproscan
IPR003884
all species →
DomainFactor I / membrane attack complexInterproscan
IPR052229
all species →
FamilyCollagen VI and Biomineralization Protein PIFInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22588
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005615
all species →
Cellular Componentextracellular spaceInterproscan
GO:0004222
all species →
Molecular Functionmetalloendopeptidase activityInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERYMEP00000019997.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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