Gene detail

Detailed information of BRAKERYMEP00000020120.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029180588.2, WD repeat-containing protein 19-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000020120

ATGAAGACGGATGAGAGAAGCTCCATAGGAGAGACCACgGTCAGCATCATAGTTGGCAAGAAAACACTATACCTGTACAACTTGAATGATCCTGACAACCCTATCGAGCTGGCTTTTCAGCAACGATATGGGAATATAGTTGGCTATAAGTGGTTTGGCGATGGTTACATTATGCTAGGATTTTCAAACGGCTTCTTTGTTGTGATATCTACCCATATCAAGGAAATTGGACAGGAGTTGTACCAAACCAGGGACCATAAGGATGAGCTGACAAGCATTGCTATGTCATTAGAGCTTAATAAGGCCGCATCTTGTGGTGACAATTGtGTGAAGATTCACGACCTGACAGAAATGAAGGAGATTTATGCCATCATAACCTTAGAAGACGCAGGAGGACACCTTGACAGGATATCATGGACAGATGATGGCCAACTGCTTGCTGTCAGTACTCAACAAGgaGCCATCCATGTGTACCTTACAAAGCTGCCAGTGCTTGGAAGTGCTAATGGTACAAGATTATCCTATCTTACATCCCTGAGAGAGGTTACCGTTGTAGACAATGTGATGCAGGAGCGTCCTCTTAGTGTGGACATAATAGTTGAACCCAACTTTGTAGCTCTTGGGCCTTATCATCTTGCTGCTGGCATGAATAACCGCGCTTGGTTTTACTCGTTAGCTGAGAAAGGTTCTGAGCAGCTGAAAGACAGGGAATACTTGGGAACTGTTAGCGTTATTCACCTGAATGCTGACTACGCTGCGGTCTTGTTTGAAGGCAAAGTGCAACTTCATTTGATTGAAGGTGAATCACTTGATGCATCGGACGAAAGAGAAACCCGACTTTTCCCCGATAAAGGCAATCAAGGACGAATTACATGCTGTGCTTTGACGTCTGATTTCTTGATCTATGGCACTGATAATGGAAGCCTCTACTATTTCTTTATTGAGGACTGGCAGTTTGTGAATGAATTCAGACATGTTGTGGGTATCAAGAAGATTTTCCCAGATTTCAGCGGGACTCACTTAGTCTTCATCGATGACAAGACAGATGGATTTGTCTACAATCCTGTCAATGATGCTACTTTTGAGATTCCAAACTTTTCTCCTAACATCCGCGGAATTGTCTGGGAAAACTGGCCGTTGGATAAGGACGTGTTTTGCGCCTATGACGAAGACAAAGTGTACACTTACGTATTTTATAGAGACACTGTTATCGGGCCTCAATGTATAATGGCAGGCTCTACCAAGTTACCTTACGCTCAGAAACCTCTAATGTTATACGGAGGCGAGGTCACGTGTCAAACACAAAGCGGAAAGACTTCCAAGCTCAACCTCACCACTCATTTCTTCCACGAAAAGCCTCAAGATCTCCCAAAAGCTGATCTGGAGACGTCTTTCAATCACTGCTTGTCATTGAAACGGTTTAAAGAAGCCTGGGCTCTAGCGCGTATTTTAGACACCAAAGAGACGTGGATTGATTTCGGTAAAAAGGCAATTTATCATTTGGACATTGAACTGGCAATAAGGGTGTACCGTAAGATGGGCGATGTAGCTATGGTACAGTCGTTGGAGAGCATTCAGgacACAGAGGATAAAAATCTCTTGGCGGGATATGTTGCCATGTTTTTGGATGAATACAATACAGCACAGGATCTGTTTCTTGGTTCGACTTATCCTTTAGCCGCCCTTGAGATGAGGCGCGATCTTCTTCACTGGGACCAAGCTCTTGAGTTGGCCAAGAGTCTGGCACCTGACCAGATTCCTTATATTTCACGAGAATATGCCCAACAACTTGAGTTCACtggaGATTACAGCAATGCGCTTCTTCATTATGAGAAAGGCGTCACCAAGTTACCAGAGAACCGCGATCACGACGAGTTGTGTGTGGGTGGAATGGCGAGGATGGCTATTAGAGTTGGAGACATCAGAAGagGTGTAAACTATGCTTCGAAGAGTCCCAGTAGACAACTTAAAAAAGAATGCGCAACCATCCTGGAGTCAATGAAGCAATATTCGGAGTCTGCTTTGCTCTTTGAGAAAGGACAGTACTGGGAAAAGGCGGCTGCTGTGTATATCAAGACGAAGAACTGGGCCAAAGTCGGTGAACTGCTTGCACAGGTGACCTCTCCCAAGCTCCACGCACAGTTCGCTAAGGCCAAAGAAGCTGATGGGAAATACAAGGATGCTGCTGCAGCTTATGAAGCAGCTAAGGATTATGACAGCGTCATCAGAATCAATCTGGATCATTTGCAAAACCCCGAGGAAGCTGTGAGGATCGTGAAAGAGACGCATTCTGTCGAGGGAGCCAAGATGGTGGCCAGGTTCTTTCAGAAACTTGGGGATTTTGGTTCCGCAATCCAATTTCTCGTGCTGTCAAAGTGCAACGATGAAGCGTTCCAGCTAGCCCAGGCTCATAACCAGATGGAACAGTACGCGGAAATAATTGGTGATGATGCCGTCACAGACGACTATGCCAGCATAGCTTTGtactttgaaaatcaaaaacagCATTTCTTAGCTGGCAAGTTTTTCCTCAAGGCCACGCAGTACGCCAAGGCTCTGAAGCATTTCTTGAAGTGTCCTGTTGGGGAGGATGGCGAGTCAATTGAGCTGGCCATCAAAACGGTTGGTCATGCTGCAGACGAGGTGCTAACACATCAGTTGATTGACTTCCTAATGGGAGAGGCTGATGGGATACCAAAGGAAGCCAAATACTTGTTCCGCTTGTACATGGCTTTAAAGCAGTACCGCGAGGCAGCACGGACGGCGATCATCATCGCTCGGGAAGATCAGAATGCAGGGAACTACAGGAATGCGCATGATGTGCTGTTCAGCATGTACAGAGAGTTGAGTGATCATAAGATAAAGATTCCTACAGAGATGAATCAAAATCTAATGATACTTCACAGCTACATTCTGGTCAAGctgCACGTCAAACGTGGCGATCACCTGAAAGGAGCTCGGATGTTAATTCGAGTGGCAAATAACATCAGCAAGTTCCCTGCACACGTTGTTCCAATCCTTACGTCTACTGTCATCGAATGCCATCGATCAGGATTGAAGAACTCTTCATTTAGTTATGCCGCTATGTTAATGAGGCCAGAGTATCGTCAGAAGATAGACTTGAAATACAAGAAGAAGATTGAACAAATTGTCAGGAAACCTGATAAAACAGAAGAGGAGGAGGCACAAGATCCGTGTCCCTACTGCAGCAATGAAGTAGCTCAGACTAAGCTGGATTGTCCCGAGTGCAAAAATACCATTCCATACTGCATCATTACGGGTCGTCACATGGTCAAGGATAACTGGACCATGTGTCCCAACTGTTCCTTTCCAGCTCTTTACTCCGAAATGATGAGtcTCCTGGAGTCCGGTGAAACAGTTTGCCCAATGTGCTCGCAAAGCATGGCAGCTTCAAATGTAAAGCAGATAAAAGACCCATCACAGTACTTGAAGACTGATAATAAAGATTAA

Transcript

BRAKERYMET00000020120

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UGF1	WD repeat-containing protein 19 OS=Mus musculus OX=10090 GN=Wdr19 PE=1 SV=1
Q8NEZ3	WD repeat-containing protein 19 OS=Homo sapiens OX=9606 GN=WDR19 PE=1 SV=2
G5ECZ4	WD repeat-containing protein dyf-2 OS=Caenorhabditis elegans OX=6239 GN=dyf-2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003256 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15911 all species →	WD40_3	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR040379 all species →	Family	WD repeat-containing protein 19/dyf-2	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR039468 all species →	Repeat	WDR19, WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14920 all species →	OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19671	WDR19, IFT144; WD repeat-containing protein 19	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.