Gene detail

Detailed information of BRAKERYMEP00000020675.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3138838.1, unnamed protein product [Porites lobata]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000020675

atggcggcttatcAGGAAATTGTTGCATCGCACAAGGACTGGCCCGCAACAGTCATGGCTGTGGACTGCACGGGCCAATTTGCTGTCCTGGGGTCGAGGAAGGGACTGGCATTCATTGACTTGAATTCCCCTACCGTAATCACAAAAAAGGTGCCAAGAAACAGCAAATGGGAATGTGGCTCTTTGGAATGGAATCCTCACCTCACACATGCTTATATATTTGCCAATGCGTCAAACCAAAAAGTTGAGATCTGGTCCTGGAAGGATGGAAGTGGCTTACAGCAGCAAATTCTCAGGGGCCACACGCGAGCAATTAGTGATCTAAATTGGTCTTGGTTTGACCCTCAGCTTCTTTCCACCTGTTCAATGGATCAGTTTATTTACATCTGGGACTTgaggGATGGCAAAAAGCCAGCAAGCTCATTGCAAACTATTGTTGGTGCCTCTCAAGTCAAATGGAATAGAGTAAATCGCCATGTCCTTGCAACAAGCCATGATAGAGATGTTCGAATCTGGGATCTTAGGAAAGGTAACACCCCTGTGGTGTACATCACAGCTCACCTGTCTAAGATCCATGGTCTGGACTGGTCACGTTCTTGTGGCACAACACTAGCAACTTGCAGTAATGATGCAACCGTTAAGTTGTGGAATACTGAACAACCTCGACAACCAGTGAATAAGCTGAATGCAAATTGCCCAGTCTGGAGAGCGAGATTCACACCATTTGGAGAGGGACTTGTAACAGTCACTCTACCACAGTTACGTAGAGAGGAGAACAGCTTGTCACTGTGGAACATACCAGATGTCAACTCTTCAATGACACCTGTGAACACTTTTGGTGGCCACAGTGGTGTAGTGTTAGAGTTTCAGTGGAGATCTCAAATTCTAGATGAAGATGAACAGTTTCAGCTCATCACATGGGCAAAGGATGACTGTCTCCGTTTGTGGCCAATTGAGTCAAGAATGATTAAGGCATGCAGTGGAGATGCTACAGCCAATTTTCCCTCACATTCAACAAGTGAAACAGCCCTTTCCATGTCTGATGAGTTGACAGAGTCTGCTATTTCGGAGTCTGTCATCATTGATTTACCAGAGATTTTTCCTAATATAGCCGCTCAGCCACACACTTTACAGCGGGAATTCGCTCTTATAAATGTCAACATTCCAAATGTCATTGTTGAGCAGatgGACGCCAGCCACAGGAGCTGTACTGTGTGTGTTACAAATGGCCCAAATGTGGTCTCATTGGTGATAACCTTTCCAGCTCATTACCCTAACCAAGCTATCCCATCCTTTGAATTTACACCCGACACATCAATTGACAGCAGTACCAAAACCAAACTCATGAAGACCTTACGTGAAACAGCTCAAACTCATGTGAAGTTAAACCAGACGTGTCTTGAACCCTGCCTTAGACAACTGGTCAGCCATCTTGAGGAACTGACGcTTCAAGAAAGGTTACCCATGGACCAGTTTTCCTCAACTGTTCCTCAACTTCATGGCCGCCTCGACCCAGTCTCTTACGGCAGTTACCTTGACGCGGCCATTCCTTTCCCTCGCACATCTGGCGCGAAATTCTGTGCATGCGGATTGCTGGTTTGTTTCAATTTGCCGGGAAGATACAGTGGCCGAGTGGGGTCTGGTGGAGAGCCAACACCGAgATCTCTCTCAGCATTCTTGGCGTACAGTTCTCGCCCTAGTAGTGGTCCGGCCCTGCCACCCCTCATCAACAGCACCCTTCAGAAATCTCACCTCAGACATACATTTGGTTCGTTTGGTCAGCAGGTGTCGTCTAGGATCAAGATCTACAGAAGCTTAAGTCAGCAAGAAGATTTACAGGATGGACAAAAGTACAGTGGAGTACCCTCTCGAAACTTCGATGTTGGCCTCGTTGTCATTCGTGACGTCAGTGCTATGATGCCCATTCATCAGTCACTGGGTCAGGCATACACACTTGAAGGAAATGATATCACTGAGATTTGCAAGAAGAACCTCTCTGCTGCCATGACAACAGGCCGCAAAGACCTGGTGCAGACATGGTCTCTATTAAGCTTAGTGCTCGACAAGAAGCTGGCACCCTCGGACTCGATGGACGAGCCGCCCTGGGCACTACATCCCTTTGGCAAAAAGTTGGTGACTTCCCTTATGGATTATTACTTAAGCATCCGGGATATCCAAACGTTAGGAATGGTGTCATGCCTGCTTGCGCACCACTCGCTCCCAGACTCTTTCAAACCTCCCAACATCAGCTGGAAGCCTGAGGTGATTCCTTCGAGCAAGTCCTTCACTTTTGGCTCCTCGTCGACATTTAACAACGATGGTCCCTCACAGtcttTTAAGCGTCCTAAGTCTCTCGGGAACGTTAGCGATCATTTGGATCATGAATCGCCACCAACTGAGTGGAGTGAGGTATCGTTTCCTCTCAGTGGTGGGTGGTCTCCACCAGTTTTCATACGAACAAAAGATCCGAGAGAGGAAGAACGAAAACAGTACGAAAAGGACTGCAGATTTGTCGATGTTTCACAGCTTAAATTGtatgatcattttatgaaacAGTACGCCGATGTTCTGTACCGCTGGGATTTGCTGGGAAAAAGAGCGGAAGTCATCAAGTTCTTGAGTGAGCCCCAACAGCCTCACAGTGGCATAGAATTCAGCACCCGTTGTTACAACTGTTCGCAAAAACTGCGTGGAGCTCAATGCGGTTCCTGCAAATCGTTTGGACTTCAGTGTGTGATATGTCATGTGGCTGTGAGGGgAGCTAGTAATTTCTGTGTGGCGTGCGGTCACGGGGGACATACCCATCATCTCCTCACCTGGTTCGAGTCCATGGAAGTGTGTCCATCAGGGTGTGGCTGCAGGTGTCTCGAGGTCGGTACATTTATAGTGGACTGA

Transcript

BRAKERYMET00000020675

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PJI9	GATOR2 complex protein WDR59 OS=Homo sapiens OX=9606 GN=WDR59 PE=1 SV=2
Q5ZLG9	GATOR2 complex protein WDR59 OS=Gallus gallus OX=9031 GN=WDR59 PE=2 SV=1
Q8C0M0	GATOR2 complex protein WDR59 OS=Mus musculus OX=10090 GN=Wdr59 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003114 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF17120 all species →	zf-RING_16	RING/Ubox like zinc-binding domain	Domain	Interproscan
PF05773 all species →	RWD	RWD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR049567 all species →	Family	GATOR complex protein WDR59-like	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR006575 all species →	Domain	RWD domain	Interproscan
IPR039456 all species →	Domain	WDR59, modified RING finger, H2 subclass, C3H3C2-type	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR049566 all species →	Domain	WDR59/RTC1-like, RING zinc finger domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46170 all species →	GATOR COMPLEX PROTEIN WDR59	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan
GO:0035859 all species →	Cellular Component	Seh1-associated complex	Interproscan
GO:1904263 all species →	Biological Process	positive regulation of TORC1 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20409	WDR59, SEA3; SEA/GATOR complex protein SEA3/WDR59	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.