Gene detail

Detailed information of BRAKERYMEP00000020705.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3171022.1, unnamed protein product [Porites lobata]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000020705

ATGTCAGCATTCTTCCAGTGCTACGTGTGCCATGCATCAGTGACAGTGGAGATTGATCGCGGCCGCATTTCTGAACCTGCTTTGTGTCGTAACTGTAACACAAACCACAGCATGGTGTTGATTCACAACAGATCACAGTACACTGACAAGCAAATCACAAAGCTGCAGGAGTCACCAGatGATATGCCGCCAGGCCAGACTCCACACACGATCATGTTGTTCTCGCACAATGACTTGGTGGATGCAGTGCAGCCTGGAGACAGGGTTACTGTGACAGGAATTTACAGAGCTACACCTATGCGTGTAAACCCACGACAACGGAATGTAAAGGCTGTTTACAAGACATACATTGATGTTATCCATTTCAAGAAAACAGACAAGAAAAGGCTCTATTCAAAGGATCCTGATGGTGTTGTGACATTTACCCAGGAAAGAGTTGAACAGCTACAGCAGTTGTCCAAACAACCTGATATTTATGAAAGACTTGCAAAAGCATTGGCCCCTAGCATTTATGAAAATGAAGATATCAAAAAAGGAATCCTCTGCCAACTATTTGGTGGAGCAAACAAGGATTTCACTGATACTGGTAGAGGGAAGTTTAGATCAGAAATCAATATTCTTCTTTGTGGTGACCCAGGAACAAGCAAGTCACAGTTACTGCAGTATGTACATAACCTTGTTCCTCGTGGTCAGTATACTTCTGGCAAGGGCTCCTCAGCAGTAGGATTGACAGCTTATGTCACCAGGGATCCGGATACAAGGCAGCTGGTCTTACAAACGGGTGCACTTGTGTTGAGTGACAATGGTATTTGTTGTATTGATGAGTTTGACAAGATGAATGATAGCACCAGAGCAGTTCTCCATGAAGTTATGGAACAACAAACGCTGTCAATAGCCAAGGCTGGCATTATTTGTCAGCTGAATGCAAGGACATCAATTTTGGCAGCTGCAAATCCAGTGAAATCACAGTGGGACCCTAAAATGACAACAGTAGAGAATATCCAGCTTCCTCACACTCTGCTTTCCAGgtTTGATCTGATCTTTTTGATGCTTGATCCTCAAGATGAGTTTTACGATCGTCGACTTGCAACTCATTTGGTATCACTGTATCATCAAACtcaggaggaagaagaagaggaataCCTTGACATGAATATTCTCAAGGACTACATAGCCTATGCTCGCTCATGCATTAATCCCAAACTCAGTGAGGAAGCTGCTCAGTATCTTATCCAAGCTTATGTAGaaATGCGTCAGGTTGGTAGTAGCCGTGGTGCAGTCACTGCTTATCCTCGTCAGCTTGAGTCCCTCATTCGTTTGGCTGAGGCGCATGCTCGGATGAGGCTGTCAtcaaaagttgaaaatgttgatGTGGAGGAGGCCCGAAGACTGCATCGTGAAGCTTTGAAGCAGTCAGCCACAGATCCCAAGACAGGACTGATCGACATCAACATCTTGACAACTGGTCTGAGTGTGTCTGACAGGAAACGCCGCCTTGAAATTGCTAAGTCCCTGAAGGAACTGCTACTGAGCAAGGGTAAAACACCAAGTGTCAAGTATCAACAGACCTATGAAGAGCTCAGGGAAGCCTCTGACCTGCCTATTTCCAGAGAACAGTTTGAAGATGCACTCAAGATATTGCGAGATGAAGACTTCTTGATTGTGACTGGAAGGACATCCATTCGTCTTATGAAAAATGGCaaagccattttcaagttcttgGAAGGAAGCTGGATTTTGGCTCATAGCcactttgattgttttgttttaattcagcCTTTAGTACGACCACTGATACCCAAAGTTGTGGGATTCATCAACCAAATCATAGCTGTAGATGAGGATAAAGCTTGTGATGCAATGGAAATATTTGATGAACTTGTAGAGTCAGAAGTCAGTATTGTGACACCTCATTTGAAGGCTTTGGTAGAGTTCTGTCTTCAGATTTCCAGTAACAGTTCATATGGCAACAACTTAAGAATAAAAGCACTTTACTTTGTTAGCTGGTTGGCAAGAGTAAAGCCCAAGGCACTTGTAAAGAATAAACTTCTGATCCCCACCTTGTCAGTTGTGTTCCCATTGATGGCATCACCACCAAATGAACATGATGATTGCGATGAGGAAGATGATGAGTTAGAAGATGGAACAGAAGCAAGTAGGCCTTGTGCTGTGGCTTCACAGGTTCTGGATATTCTTGCTCTTCATTTTCCTCCTGAGTCTGTTATTCCACCTTTGATGCAGTTTGTTATGCCAGCTCTTAATAGTGAAGATCCTTATAAAAGAAAGGCAGGACTAATAGCTCTAGCAGTATTGGCCGAAGGATGTGCTGACTACATCAGAAACAGATACCTTGAAGCTGCCTTGCAGACCATTTGTAGAGGTCTGTCAGATGCAAACCCTTTGGTACAAAATGCTGCCCTATTTGCATTGGGTCAGTACTCAGAGTACTTGCAGCCTGATATTAGTAAATACAGTGTGGACATTCTTCCCCTTCTCTTTGAGCGCTTGGTGAATTCATCCGACAGTGAAAAGAGTTCAACTAGCATTACAAGGACCTACTATGCACTGGAAACATTCTGCGAAAATTTAGGTGAAGGAATCCTACCTTATCTGCCTGCACTTATGGAAAAACTTCTCCTGGCCTTGTCACATAGTTCGGTGAAGCCAGGTGGAGCCGTAGGTAGCAATCGAGACCCTGAAGTCTGGCATTTTCCCAATAGTGTGGTTCAGCAGTGA

Transcript

BRAKERYMET00000020705

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P33991	DNA replication licensing factor MCM4 OS=Homo sapiens OX=9606 GN=MCM4 PE=1 SV=5
P49717	DNA replication licensing factor MCM4 OS=Mus musculus OX=10090 GN=Mcm4 PE=1 SV=1
Q6GL41	DNA replication licensing factor mcm4 OS=Xenopus tropicalis OX=8364 GN=mcm4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005944 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17855 all species →	MCM_lid	MCM AAA-lid domain	Domain	Interproscan
PF13513 all species →	HEAT_EZ	HEAT-like repeat	Repeat	Interproscan
PF00493 all species →	MCM	MCM P-loop domain	Domain	Interproscan
PF21128 all species →	MCM4_WHD	MCM4, winged helix domain	Domain	Interproscan
PF17207 all species →	MCM_OB	MCM OB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041562 all species →	Domain	MCM, AAA-lid domain	Interproscan
IPR031327 all species →	Family	Mini-chromosome maintenance protein	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR008047 all species →	Family	Mini-chromosome maintenance complex protein 4	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001208 all species →	Domain	MCM domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR033762 all species →	Domain	MCM OB domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR018525 all species →	Conserved_site	Mini-chromosome maintenance, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630 all species →	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0042555 all species →	Cellular Component	MCM complex	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000727 all species →	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006268 all species →	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0006271 all species →	Biological Process	DNA strand elongation involved in DNA replication	Interproscan
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:1902975 all species →	Biological Process	mitotic DNA replication initiation	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14442	DHX36, RHAU; ATP-dependent RNA helicase DHX36	EC:5.6.2.6	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.