Gene detail

Detailed information of BRAKERYMEP00000020767.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3169942.1, unnamed protein product, partial [Porites evermanni]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000020767

ATGACAAATGAAATTAACGACGAGAAATTAAAAGAGCAACAGAACAAGAAGGCAGTTCTAGTTAAGCTCTTACATGGTTTCGCTCCATACGCTGGTCAAGTGGTCGTGTATTATCGTGGGATCTGGGGCACAGTCTGCGAGAATGGCTGGGACGAAAAAGATGCCTTAGTTGTTTGCCGGGAGTTGGGCTTTCCTGCTGTAACCAAGGTGACCAAACAGATGTTTTTCGGAGTCCCAGCGACGAAAATAACTGTTGAGCAATTGGGCTGCTATGGCAACGAGACAAAATTGAGTGAATGTTTCTACAAGACGACGACAATGATGTCGGAATGTAGCACCTTAGGGAACAAAGAAGCTGGGGTGATCTGCGAAGCGGGCAATCGCACCGATCCTAGAGATATTCCAAAAATCCGCTTGACGGGTCCACTCTACAGAGAAGGGGCAGGAATCATAGAGGTATTCATAAATCGGCAGTGGGGGAGGGTATGCGACTACTCCTGGAGTTATAACGAAGCCGAAGTCGCTTGTAAAGAGCTTGGCTTCCCTGGTGCGGAAGAAGCAACCTGTTGTGGTTGGTATTTTGGAAGGGGATCTGGGCCGCCCGTCGTGGGCTCTATAAACTGCAAAGGAAATGAAGCATCATTGTTTCATTGCTCCCATGTGGGAAGATCAGGGGCATCCTGCAGCAGAAGGGACAGTGCTGGGGTGATATGCAAACTAAATAAGCCAAACGTTCGCCTGGTGGGATCTCCCCTCGCGCATGCGGGTTTCGTGCAAATTCGCCATAACGGCCGTTGGGGTTCTTTCTGTGACTGGTCCTGGGGACTAACGCAAGGTCACGTGGTTTGTCGTGAGCTTGGTTATCGTCGAGTCCTTTACACTACCTTTGGTGAATTATTTGAAAAGCAGTCTGATGGGCCGATTTGGGTCGAGGAAGCAGCGTGTAGTGGAAACGAGTCGTCTATCTTTGAATGCAGTATAACATACATCCGGGACCATCATGAGGTGTATCTATGCGATCACACGCATAGTGCTGGAGTGATTTGTGAAAGTAACAAAGAACCCGGGTTAAATGAAACCGCGGTCGTCAGAATACAAGGAAGCAACCTCACACACATGGGACGAGTGGAGATAAAGCAACAGGGTTTCTGGCACGCTGTATGCAGTATTGGCTGGGACAAAAATGATGCCGATGTCGTTTGCCGTCAGCTTGGATATCCAGAGGCGGTTCTAGAAGTCGGTCACGGACAGTTTGGAGTTCGCTCAGGACCTATGTGGTTGACTAGTATGCGTTGCCAGGGTAACGAGACCTCATTAGACCAATGCTTGAACGCTGGTTGGGAGTTGGAACCAACTTGCGCAGATCAAAGTGGCGCTGGAGTGGTGTGCAAAATGCAGAACATTACCGGAGATGGAGAAGTTAGACTTCGCGGTTCCAATGAAACAAACGCTGGCCGCGTGGAGATCCGAGTTGGAGGAGTCTGGGGCACAGTATCTGACAGGGGCTGGGACATTCGGGATGGTCACGTGGTATGCCGCCAGCTCGGATATGTCAAAGCAGTGCGCGTGTTTACACACTCCAGATACGGGTATACAGACAAGAATATATGGATGAGTTCTTTGGAGTGCAACGGTAAAGAGAAACTCCTGCTGGACTGTCCTCGACGGATTAACCTTGATCTTTACGTCTCAGTTTTCGATGCTGGTGTTCAATGTACAAATCAAAGCAACTACAGTAGcgaGGTGGAAGTTAGGCTGTTTGGTATGGACACGCCCAACGCTGGTCACGTGCAAGTCAAGTATAATGGCACGTGGGGCACGATTTGTGGTGAAAGGGGTTTAACGTACCAGTCAGCGGAAGTAATCTGTCGACAGCTTGGTCAGGGACTTCCAGTTAAGCACTACTTTATGCACAACGAATGCACAGCAAAGAATCTGGGAGCTACGCGGGTTTGGCTCTCCAACCTcaactgtcgaggaattgagGCTTCCATAGACGAGTGTCCTCATAGAGGATGGGGCAGACTGCATCCTGAATACTGTCGGGATTGTACACCTCAGTATTGCAGCACTTGTTTGATTTGTCAGCCTCGAGACACAAATCTCACAGGTACAAAGAACGTGTTTCCATTAGCCGGCGAAGCGGGCGTATTTCAGTGGTCAAGGAATGAATAA

Transcript

BRAKERYMET00000020767

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95218	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Oryctolagus cuniculus OX=9986 GN=Dmbt1 PE=1 SV=2
Q2VLH6	Scavenger receptor cysteine-rich type 1 protein M130 OS=Mus musculus OX=10090 GN=Cd163 PE=1 SV=2
Q4G0T1	Scavenger receptor cysteine-rich domain-containing protein SCART1 OS=Homo sapiens OX=9606 GN=SCART1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000099 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR050912 all species →	Family	Lysyl oxidase-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45817 all species →	LYSYL OXIDASE-LIKE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004720 all species →	Molecular Function	protein-lysine 6-oxidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0018057 all species →	Biological Process	peptidyl-lysine oxidation	Interproscan
GO:0030199 all species →	Biological Process	collagen fibril organization	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000020767.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.