Gene detail

Detailed information of BRAKERYMEP00000021214.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044175181.1, laminin subunit gamma-1-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000021214

ATGCCTGGTTCTGGAAGACGCTGCTCATCACGTTGTTCGAATTGCGGGACTTCGAActtcgttttctcgtgtttggttGTAATTTTTGCAGCTCAGGCTGTCTATTGCCAGAATTCATGTAATACAGGACCCTGTTACCCATCTCCTGATGACATTGCCGGGAAATTTAATGTGACAGCGAATTCAACTTGTGGGAACCCTTCGGAGAATTACTGCCTCAATTTGGATTGTACCAAAGTTTGTAACGCGGAAGACGCCGGATTGAAACACCCTGTTAGTTTCGTGCAAGATCCTTACGCTAGTAATTCGTTCTGGAAATCTAAAAACTTCGAATACCCCGTTGTCTTACAGCTAGACATTGGAAGAACTATGATGCTGTATAGATCCGTCGTTACATTTTATCACGAGTTACCGGCCGCAATGTACTTTTTGAAGTCGAACGACTTTGGAGCGACTTACAGCCCTGTTACTTTCTTCGCTACAAACTGTACAGAGTATTTTAACATGCCAGAAACTCCAGAAAATGAGTTAGAAGCTTTGAAAGTTCAGTGCTTCAAGATCGATACGGGGAATAATCCGTTCAAGCAACTCACATATACTCCATTGAATGATGAGGTTGTTAGTGGTGGTCTGCTCAGTAATCCTGATAACCAAAGTTTCTTTCTGATAACCAATCTCAAAATGGTTCTTGTCAAATTTGTCATATCCAGTGAGGTCAACCCAGGTAGCATTGCAGAATCACTCAAAAGAAGTTTCTATTTTTCCGTGGAAGATTGGGATGTTCAGGCCTCATGCTCTTGCAATGGACAAGCGTCAAAGTGTGACGAAAAGGATGTTTCAAAGTGCATATGTGAGAGAAACACTGATGGACACCATTGTGATAGATGCTTGCCTCTGTTCAACAACAAACCTTACAAAATCGCAGAAGCTTGTGAAGCGTGCAAGTGTAATAATCATGCTGATAGCTGTACTTATAATGAAAGCAAAGGATATGGAGTTTGTGATAGCTGTCAAGACAACACATATGGAGACTACTGCCAGCTTTGCAAACAGTTTTTCTATCGTAATCCAATAGTACCCTTGAATGACTCCAGCACTTGTCTTGcATGTGCATGCCACATCCCTGGTGTAAACAGTTCAGCAAACAGCTCTACATGCGATGGGGTTACAGGACAATGTGCCTGTAAGACTCGTGTAACAGGAAGGGCCTGTGACACCTGTCTTGATACACACTGGAATCTAAGCGCAAGAAATGAGGAAGGATGTGAAGTTTGTGGGTGTAGCCTAACTGGGACGGTGAATGGATCTGATGTCTGTGATAAGCTTAATGGACAATGTCCCTGCAAACCGCTGCTGACTGGGCGAAAATGCGACAAATGCCAGTATGGCTACTTTGGCTTGACTGTGCAAAATCCAGGCTGTACAGCATGCAACTGTGACATGGCTGGATCAGTAAATAAGTCTTGTTCATCGACTGGGCAGTGTTACTGTCGTCCAAGATTCTCCGGAGATAGATGTCATGTGATTGAGCCAGGTTTCTTTGTACCAAGTGTAGATTTTATGACGTTCCAAGCTGAAGATGCCATGGCTGTGACTCCCCCAGAGAAAAGGATAAACCACATCACCATTGTTAATACTGCTGGAGACAGTGTCCTCATGGTGGGAGTAGTTCTGCAATCTGGTGCTAATAATGCCACCCCGACTGTGCTACGGTTCACAGTAAACATACCCAAAACAGGATTCTATAATTTGATTCTGCGCTACAAGACAAGCTACAACTGGACATTGATGAAGATAAATGCTTTGCTGCGAACAACCTTTGTCCCTTTTTCCTGCAACAATGAAACCCAAGTTGATAGCAACGAGCGTTACTTTCTCAGTAGTCCGATAGTAGCTGGACGTGAATCTCATGATTTTGGAAAGCAGTGTTTGTTAGCTGGCCAGTACCATGTAAACCTGGAAATCCCCTTTCAGAATGCTCAATCAGAAGTTGCTAGTGCAAGGAGGCGAAGAACAGTGGAAGATAAAGATGTACTTGTTGACTCCATTGTGGCCATGCCAACCGTGTCAGAGTATGATGCCTTCCAGGATGCTTCCCCTGCAATACAGGAAAATATAACATATTATTACAATGCTTCAGCTTCCTTGCGAACATGGTCGGCAAACTCCAAGGCTGGAAGTGCTGCTCTTTCTCCCATCTTTGGAGAGATTTTTGGGGAAGGACAAAGTTGCAACTGCAGCATAGTTGGATCAAATAATCCTCAACAATGTGAGAGAAATGGAGGACAGTGTTCCTGTAAGATGAATGTGATTGGTCAAACATGTGATTCATGTAGACCTGATTACTTTAATTTCACCTCTGGTCAAGGGTGCACAGCGTGCAACTGCAGTGTGATTGGCGCCAATGAAACATCTTGTCATCCCGAGACTGGACAGTGTCCGTGCCGGGAAAATGTGATTGGCCAGCATTGTGACAGTTGTCTGCAGTATTACTACAACTTTAACAGTGGAGCAGGCTGCTCTGCTTGTGACTGTCACCCTGTGTATTCTACCAGCCTTCAGTGTGATGGGAGCAGTGGTGTTTGTAGCTGCAAGCCTGGAATAAATGGGGGAAAATGTGCAGGATGCACCGACCAGTTCTATAATCTGACAGACCAAGGTTGTAGCCCATGTGAATGTAATCTTGATGGGAGTATGAATCTTGTTTGTAACAAAACCACTGGTCAGTGTCCTTGCAAGGTCAACTCACTTGGTAGCAAGTGTGATGCGTGTCCATCTGGTTTTTATGGTTTGGAGGCAAACCATTCCAAGGGTTGTCTCAAGTGTCAGTGTTCAAACAAAACATCAGACTGCATAGTGGACCCAGGCTGGTTTATTTCCCACATTGTAACTGACCTGTCATTTCGAGTCGACAATGTTGATGTGGATGGTTGGACTGGTGTGAACAGTGCTGGTGACCCTGTGGCTGTTGAATTAGACTGGGATATCCCTGTAGTTCAAGTGCAAAAGGCATCCATGAAAATTGACACCGTTGGTTCGGAGGATGTGTATTTTGTTGCACCTGCGAAATATCTTGGAGACAAGAGATTTGCATACACTTTTACCCTGTCATTCCAGTTACGACAAGAGAATGCTTCCTTCCCGGCAGCTTCTTCCAAGGGCGATGTTATACTTGAGGGCAGGTGGTTTGACCAGCCCCTTGTTACTAGCCTCAGTCCTCCTCCACCAGCTGGAAGTTTTTACAAGTATGAGGTGAAACTTGTTGAAAGTGCCTGGAGAGTGGGAAACACGTCTGGCCGACAACCCACAAGCGAAGAGATGATTCGTGTGCTCAGTCATTTAACTTCACTGCGTATTAGAGCCAAATGGACAACACTAACCGCTGCGCTATTGAGCCGACTTGGTGACATTGTTTTGACAGTCAGCAACAGGACGAGCGTAATTCAAAACCCGGAAAATGCATCGAACATTGAGCGTTGTGCGTGCCCTCCTGAGTACACAGGACAATTCTGTGAACAGTGTGCTGATGGCTACACTCGCAGCTCCCCTAATGGCGGACCTTACGTGACTTGTGTCCCATGTCATTGTAACAACCACTCAAACACTTGTCATCGTGAGACCGGTGTCTGTAGTGACTGTTTACATAATACCACAGGTGATCATTGTGAAAAGTGTTCTGTCGGGTGGTATGGCATCGCTACCAGCGGCACACCTGAAGATTGCAGCCCCTGTCCTTGTCCTGGTGGGCCATACGCACCAAATCAGTTTGCTAGCGGCTGTTTACTTGACACCGACGGTTTGCCGACTTGTCAGAACTGTTCACTGGGATATGAGAACCGCTTCTGTAACATGTGTTCGGATGGTTACTTTGGACGGCCGTGGGAACCAGACGGTCAGTGTCGCAAATGTGATTGCAATGAAAATACAGACCCTGATGTTAAAGGAAACTGTAACAATATCACCGGGGAATGCATTAACTGTCTGTACAACACGACCGGATTTAATTGCCAGTGGTGCGCGCCTGGATTCCATGGAAGTGCATTGAATAAGACTTGTACACCTTGTAATTGTTCCAGTGAGGGTGCTGTCAACAATGAGTGTAATAACGTGACAGGTTATTGCAACTGTCACCCATATGTCACTGGTAAAACGTGTGACCGCTGTGAACAGAACGCTTTCAATTACACTTCGTCTGGTTGTATGCCGTGTAACTGTGACATTGATGGCTCAACTGATCTACAGTGTGACTCGATGTACGGCAACTGCAGCTGCAAACAAAAGGTGATTGGTTCAAAATGTGACATGTGCAGTGCTGGCTTCTTTGACGTCTCACAAGGCTGTTTAGATTGTAATTGCACATCAAATCAGACAGTCCAGAACACAACTTGCAGCTCGACGAGCGGCCAGTGCGAGTGCGCGGTCAGCACAGCCGGGGGGCGATATGGAGGCCGGCAATGCGAAACATGTGCAAGGCATACTGTTGACATTGGAAGGAGTTCCCCGTCCTGCTATCCGTGCACAGAACCTTGTTACAGGAACTGGGAATATCTCATTGTCAAGGAGACAGAAAAAGTCAACCAGCTGAGTGGCAATGTGACTGAACTGCTTCAGTCATTCGGCAGTATGTCTGTGGACGCAATCAACAGCACACTTCGGTTGCTAAAAACCAATATTACTTATGCAAATCAGATATTTAGTAGCGGAGGACGAGCCGATTTGCAACAGAAGCGAGATCAGATTAACAGGATTCAAAGCTCCATTGACACGCTCCAAACCCAACTCAACGATTCCCAAAGTAAGATCGAGGACGCGCAGAGTTACCTCAGTGGACACGTGACCAACTTCAATGGGAGCGTGCGCATTACTCCCGCCGTGTCTCTCATGTACCCTTCGTTTCCGGTGGTCTGCCCCAGCGGAGGAGGGGTGAGTGTGATCGTGGACTGGAGGTGCATAGATGCCATGGCTGTGAGCTACCGTCAAAGAGCTTTGAGAGCCAATGAGTCTGGTCACGCAAACTATACGAGTATTCGAAGCAGCTACAATGAGATTCAGCAAGCAAATTCTACAGCTTATAATGCTGCAAGACGGATCAACGAGTCACTGAGCAGGCTTCCAGTGGTCTCCGAGTTGAGAAGGACAGTTGAATCTGACCTTGGTGAAGGCTTTCAGAGTTTGTATCACAACAACTCCTTGAAACTGGATGAAATCCGTCGAATCGTCCAAATTTTAGAAGAGCTTCTTTCAAATGTCAACAGCTTCGGCGAGAAAGCGATGGTGAATTTGACCAAAGCAAATGAAACTGCATTTCAAGCCAAAAACGAGTCCGGTCAGCGGAAACGCGAAGCACAGGATGCGCTCGAAGAAGCAGAAATCGCTCACTCTGACGCTATGGAGGTCCACCGAAGAGCGCTGATTGCCATGAACGCAGCGAGGGAATTCAAGGAGAATGCAACGGAGGTTCTAAACCACACCAAAGAGGCCATCAGCAACGTAACAGAGGGGATAAACACAATTGCGCGAGTCAATAACATGACAGTGGAAGCTGTTAACATATCAAGTGAAGTTCGTGCCATGTCTATGCCTGTTAGTTTGCAACAAATTCAGAATCTGACCCAGGATATCCTCAACACCAATGTGAGCCAAGAAATGGTGAACCAGACTTTAGAAGCGGCGCAAGAGGGGCTTGAGCAAGCCAAACAAGTGGAGGAACTCTCGCAGAGAGCCATAACTGTAGCTCAAGAAACACTCGAAGAGGTTCAGAGTATAGAGAACGCCATAAACTCATCTGAGTACATCAGGAGAGAAGTCATGTCGCTTCACCAACAAACGGACGAAATGATTGCAAACGTCAACAACATAACCCAAACGGTCAGCGACCGTTTCGCACCGTCGTACTCATCCGGAAAACAGTTATTAACCAAGATGAACGAAACATACGCCAAAATGGAGGATGGCCTGAAATGCTTTGACAAAGCTAAAAGTGATGCTCAGAATGCTTCAGACACAGCGCAACTATCCTTCAATATCTCGAAAAATGCCAAACAGACGTTTGATACCAGCAATGCTTCCTTACCGCAAATTGCCGCTCAGGTGAACTTGTCCTTTGATGCAGCCAACACAAACTTGTCAGAAATAGAAGATACTCACCAGAAATCAGAGCAACTGCTGCAAGATGTGATGGAAGCTGAAGAATTGCTTCAACAGTACACCGCACAGCGGGACGAACTCGAGAGACTGGGCCGAGAGATTAGGGACTTGGACCAAGAAGCCGATGAGCTGCTGGCACAGTTTAGTGTAGCCGCTGAGCAGTACGGACAGTGTGCAGGCGCCGCTTAA

Transcript

BRAKERYMET00000021214

Protein

BRAKERYMEP00000021214.1

MPGSGRRCSSRCSNCGTSNFVFSCLVVIFAAQAVYCQNSCNTGPCYPSPDDIAGKFNVTANSTCGNPSENYCLNLDCTKVCNAEDAGLKHPVSFVQDPYASNSFWKSKNFEYPVVLQLDIGRTMMLYRSVVTFYHELPAAMYFLKSNDFGATYSPVTFFATNCTEYFNMPETPENELEALKVQCFKIDTGNNPFKQLTYTPLNDEVVSGGLLSNPDNQSFFLITNLKMVLVKFVISSEVNPGSIAESLKRSFYFSVEDWDVQASCSCNGQASKCDEKDVSKCICERNTDGHHCDRCLPLFNNKPYKIAEACEACKCNNHADSCTYNESKGYGVCDSCQDNTYGDYCQLCKQFFYRNPIVPLNDSSTCLACACHIPGVNSSANSSTCDGVTGQCACKTRVTGRACDTCLDTHWNLSARNEEGCEVCGCSLTGTVNGSDVCDKLNGQCPCKPLLTGRKCDKCQYGYFGLTVQNPGCTACNCDMAGSVNKSCSSTGQCYCRPRFSGDRCHVIEPGFFVPSVDFMTFQAEDAMAVTPPEKRINHITIVNTAGDSVLMVGVVLQSGANNATPTVLRFTVNIPKTGFYNLILRYKTSYNWTLMKINALLRTTFVPFSCNNETQVDSNERYFLSSPIVAGRESHDFGKQCLLAGQYHVNLEIPFQNAQSEVASARRRRTVEDKDVLVDSIVAMPTVSEYDAFQDASPAIQENITYYYNASASLRTWSANSKAGSAALSPIFGEIFGEGQSCNCSIVGSNNPQQCERNGGQCSCKMNVIGQTCDSCRPDYFNFTSGQGCTACNCSVIGANETSCHPETGQCPCRENVIGQHCDSCLQYYYNFNSGAGCSACDCHPVYSTSLQCDGSSGVCSCKPGINGGKCAGCTDQFYNLTDQGCSPCECNLDGSMNLVCNKTTGQCPCKVNSLGSKCDACPSGFYGLEANHSKGCLKCQCSNKTSDCIVDPGWFISHIVTDLSFRVDNVDVDGWTGVNSAGDPVAVELDWDIPVVQVQKASMKIDTVGSEDVYFVAPAKYLGDKRFAYTFTLSFQLRQENASFPAASSKGDVILEGRWFDQPLVTSLSPPPPAGSFYKYEVKLVESAWRVGNTSGRQPTSEEMIRVLSHLTSLRIRAKWTTLTAALLSRLGDIVLTVSNRTSVIQNPENASNIERCACPPEYTGQFCEQCADGYTRSSPNGGPYVTCVPCHCNNHSNTCHRETGVCSDCLHNTTGDHCEKCSVGWYGIATSGTPEDCSPCPCPGGPYAPNQFASGCLLDTDGLPTCQNCSLGYENRFCNMCSDGYFGRPWEPDGQCRKCDCNENTDPDVKGNCNNITGECINCLYNTTGFNCQWCAPGFHGSALNKTCTPCNCSSEGAVNNECNNVTGYCNCHPYVTGKTCDRCEQNAFNYTSSGCMPCNCDIDGSTDLQCDSMYGNCSCKQKVIGSKCDMCSAGFFDVSQGCLDCNCTSNQTVQNTTCSSTSGQCECAVSTAGGRYGGRQCETCARHTVDIGRSSPSCYPCTEPCYRNWEYLIVKETEKVNQLSGNVTELLQSFGSMSVDAINSTLRLLKTNITYANQIFSSGGRADLQQKRDQINRIQSSIDTLQTQLNDSQSKIEDAQSYLSGHVTNFNGSVRITPAVSLMYPSFPVVCPSGGGVSVIVDWRCIDAMAVSYRQRALRANESGHANYTSIRSSYNEIQQANSTAYNAARRINESLSRLPVVSELRRTVESDLGEGFQSLYHNNSLKLDEIRRIVQILEELLSNVNSFGEKAMVNLTKANETAFQAKNESGQRKREAQDALEEAEIAHSDAMEVHRRALIAMNAAREFKENATEVLNHTKEAISNVTEGINTIARVNNMTVEAVNISSEVRAMSMPVSLQQIQNLTQDILNTNVSQEMVNQTLEAAQEGLEQAKQVEELSQRAITVAQETLEEVQSIENAINSSEYIRREVMSLHQQTDEMIANVNNITQTVSDRFAPSYSSGKQLLTKMNETYAKMEDGLKCFDKAKSDAQNASDTAQLSFNISKNAKQTFDTSNASLPQIAAQVNLSFDAANTNLSEIEDTHQKSEQLLQDVMEAEELLQQYTAQRDELERLGREIRDLDQEADELLAQFSVAAEQYGQCAGAA

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P02469	Laminin subunit beta-1 OS=Mus musculus OX=10090 GN=Lamb1 PE=1 SV=3
P07942	Laminin subunit beta-1 OS=Homo sapiens OX=9606 GN=LAMB1 PE=1 SV=2
P55268	Laminin subunit beta-2 OS=Homo sapiens OX=9606 GN=LAMB2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002658 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00055 all species →	Laminin_N	Laminin N-terminal (Domain VI)	Domain	Interproscan
PF00052 all species →	Laminin_B	Laminin B (Domain IV)	Domain	Interproscan
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF21199 all species →	LAMININ_IV_B	Laminin IV type B domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR050440 all species →	Family	Laminin/Netrin Extracellular Matrix	Interproscan
IPR013015 all species →	Domain	Laminin IV type B	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR008211 all species →	Domain	Laminin, N-terminal	Interproscan
IPR000034 all species →	Domain	Laminin IV	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10574 all species →	NETRIN/LAMININ-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0009888 all species →	Biological Process	tissue development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05636	LAMB1; laminin, beta 1	-	Toxoplasmosis	ko05145	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.