Gene detail

Detailed information of BRAKERYMEP00000021265.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_020602329.1, low-density lipoprotein receptor-related protein 4-like [Orbicella faveolata]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000021265

ATGACAGATTCTTGCTatccattgttgttgttgttgttttttctagAATTCTCTAGCTTTCTTCTCTTTGCCGAGGGACGTAGCATCAGACAGCTTGCATTAAACCCTACTGCTGATTCCTCCTTACGAATTCCCCTGTCAGAAAGTCCGTACTCGGCTATAGCTCTAGATTACAACTTTGAAGACGAAAAGGTTTACTGGACAGATACTTCACGTGGCACAATCTCCCGAGCATTTCTAAACGGATCCTCTCAGGAAACTGTTGTGTCTTCCCGAATACAGTATCCGTATGGACTTGCAGTGGATTCGTTTAGTCAGAACCTTTACTGGACAGACGTGACAGAGCGTGTGATAGAAGTTGCTTCCCTGAAAGGACAGTACAGGAGGGTGCTTATACGCGCTAATTCCTATCTAGAAGCTCCTAGAGATCTTGCGCTGGACGTCACAAGAGGATTAATGTACTGGACTTCTTGGGGATTTAGGGCAAGGATCGAAAAAGCAAACATGGATGGCAAGAACAAATCCACGGTTATTGACTCTGAAATCTACTATCCTAGCGGTCTTGTCCtggatttaaaaagaaattggcTCTACTGGGTGGACCGGAGTTACGATAAACTAGAGGTGTTCGAGTTTTCAACAAACACTCGAAGACAAATAATTGCATCTCAAGGGCTATCTGAACTGGAAAATCCATTTGGTCTTGCACTTTATGAAGATCACCTCTTTTGGACAGAATGGTATTCTAATGCCATCTATCGCGTGGATCTGGAAACAGGAAGTAATGAGAGTAGCGTGGTGAAAGTCCTGCCAACCCAGTCTAGCCCCATGTTAATTCACGCTTATGACAAGAATATAACGATTACTCCAGTTACAGACCAATGTAGCAACAACAACGGCGGGTGCAGTCAGCTCTGCTTGCTCACTCCATTTGGGagaaagtgcgcatgctcacCCGGAAAAGTTCTTGATGTTGATGGCAAAACGTGCCAAGCTATTCAGGAGATTCTGCTGTTCGCAGATGGCTCAAATCGTAAAATAATGATGGTTCCCGCAGACGACGCCGACCTCCTCTCCTCTGTGCCCTTATCGACAAGCATCATCAGCCGTCCCGTTGCTCTTGACTATGACGTCGTGGAGGACAGAGTCTACTGGACAGATGTGACGAGGAACACGATTTCTCGATCCTATCTAAATGGTTCTATGTCGGAGGTCATTTTGGACGAGCACTTGCAAACGCCAGATGGACTAGCAGTAGACTCTGCAGGGAGAAATCTCTATTGGACTGATACCGGAACCAACAGACTGGAAGTCTCTAAACTGAACGGTTCTTATCGGAAAACCCTCATTGCTACCAACCTCGATCAACCAAGGGATATCATTCTTGATGTGACAAAAGGCATCATGTATTGGACAGACTGGGGATCTTATGCAAAGATAGAGAACGCTACCATGGCGGGAAAACAACGAGGCGTTATAGTTGGCTCAGGGCTGCAATGGCCCAACGGCTTGACACTTGACAGACAAAGAAACCACTTGTACTGGGTGGATGCCGCCTTTCATAAGCTCGAATACCTAGATTTGGGAACAAACAACAGGGTGACTTTACTAAGTTCTTTGTCCATCTTGACTCATCCCTTTGGCCTGACGCTTCTTGGCGATCACTTGTATTGGACCGATTGGATTTGGGACAGTGTTTTTCGAGTCAGCAAACTGAATGACAGTGGCCTGGTCTCGACTTTTATCACTGGTCTTAATCAGCCAATGGATATTCATGGGTACAATCTCAGCGAGCATGTGGAGCCGGttACAGACCAGTGCAGTGTGAATAATGGCGGATGTAACGAACTTTGCTTGCTTTCCCCGTTTGGACGAGAGTGCGCATGCTCAAACGGATTCAAACTTAGTGATGATGGCACGACATGCTATGCTCCTCCGCATTTCCTGCTGTTTGCCGACGCATCCTTCGGCAGGATAATGAAATTTTCCCCTTACGACCCTCACTCGCTTCAGTCTCTGCCATTGTCAGGCAATATACGCCGCCCCGTTGCGCTAGGATATGATGTAGTAGAGGACAGAGTGTACTGGACAGATGTGTGGAGGAACTCTATTTCCCGTGCATTCCTGAACGGCTCTTCCTTTGAGGATCTTTTTGACGGAACTGTGGAAAATCCGGATGGATTGGCGGTAGACCATCTCGGGCGAAATCTTTATTGGACTGATACTGGAACAAACACGCTGGAAGTCTCCAAACTGGACGGTGCTCACAGAACGGTCCTGATAGCAAATGACTTGGACCAGCCAAGGGACATTAAACTGGACGTCACGAAGGGATTTATGTACTGGACCGATTGGGGGTCTTTTCCAAAAATTGAGAAAGCTTCGATGACTGGTAAAGGGCGAGTCGTTCTCGTGGACTCAAATCTAAGGTGGCCAAATGGTTTGACGCTTGATCAAGAGAAAAAACGCCTGTATTGGGTGGATGCAAGTTACGACAAGCTTGAATACCTGGATCTCAATAACAACACGAGGGTAACGTTATTACAGTCGTCAGATGTATTTCCTCACCCCTTTGGGCTGGCAGTTTTTGGGGATTACCTGTTCTGGACTGACTGGCAAAGATACACTGTTTATCGAGCTCACAAAGACCAAGTTTCCAACCCCTTAGCTTATATTACCGGCATTGGACAGCCCATGGACATTCATGGGTACAACCGCACTGCACTTATGAATCAGGGTAACTCTTCTTGCCAGTTCAATAATGGTGGTTGCAGCCATATTTGTCTGCTATCTCCTGAGGGAAGTGAGTGCGCATGCCCCGGTCATTTTTTGCTCAACAAAGATGGAAAAACTTGTCATTCTGCTTTCCAGAAGTTTTTGCTGTTTGCCGACGCAAACCGAGCACAGTTACTTCTTCAGTCGTTGGACGTCTCTGACTCCAAAGCGGGAGCTGTCCCAATCGAATCGGATTTCAGCATTAGCAGGCCAGTTGCCCTTGATATTGATTTGAGAGAGGACAGAATTTACTGGACAGATGTCACCCTAAACACAATCTCGAGAGTCTTCATGAATGGATCATCCCCAGAAGTTCTTTTTACAGCGACTCTTAATCCCGATGGTCTGGCTGTTGATCCGGTGGGTGGGAATTTGTACTGGACGGACACTGCCAGTAACAAGATTGAGGTTAGCAGATTAGACGGATCAATGAGAAAAACGCTGATAGATCAGGATCTGGACGAGCCAAGGGACATAATACTAGATCTCTATAAAGGGTTGATGTACTGGTGTGATTGGGGTGTGGACCACAAGATTGAGGTGGCCAACATGGATGGAGATGGCAGAAGGCTTCTAGTTCGTAGAGGACTGTACTGGCCAAATGGGCTAACATTGGATCACACCCTAAACTTGTTGTATTGGGTGGACGCGTGGATGGATGTCCTGGAATATTATGACTTAGAGACTCACAGGATAACAACGTTGGTGGATAGTAAATCCGGTATTTTGCCACACCCGTTTGGTTTGACGTTACTCGATGACTACATATATTGGACAGATTGGGTTCGGGATGATGTTTACAGAGCGAACAAGACATCGCCTTCTTCAAATGTCACGGTCTTTGTCGGTGGACTTGGTCAGCCCATGGATATTCATGCATACGACAGAAATCAAACTCTTCCAGATCATCCTTGCTCCTCATCTAATGGTGGCTGTTCCCATCTCTGCCTTCTGAGAGCAGATGGATATCGCTGTGCCTGCCCGGATTCCCCAACGCCTGGCGATCCGTGTAACGCCAGCGGTAAGTGA

Transcript

BRAKERYMET00000021265

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P98157	Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus OX=9031 GN=LRP1 PE=2 SV=1
Q07954	Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens OX=9606 GN=LRP1 PE=1 SV=2
G3V928	Prolow-density lipoprotein receptor-related protein 1 OS=Rattus norvegicus OX=10116 GN=Lrp1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000278 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813 all species →	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000021265.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.