Gene detail

Detailed information of BRAKERYMEP00000021386.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044172469.1, protein zer-1 homolog [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000021386

ATGACAAAGGACGAACTAGGGCCAGGCAATGTTTCCTCTCTTCTCGAAATATGCATGAAATGGTCATTGGAGTACCTCGAATCGTGCCAGTTGCCTAAGAATGAGAACATTTTTCTACCAGAGGATATTTGCGAAGCACTCATTTGTAAAAAGGTCAAGACGGGAAACTGCGACGATGATTTTATCGCTACGTTCTTCGCTGATGTGCGGACAAGTCGTATGACCAAGGCTCATATTAGCAGTTCTACCGTTACAGATGCAGGTATTGAAATGATATCTTGTCATCCGCTCCGAGAAGTGGATATTTCCAAGTGCTCAGCGTTGTCAGATAAATCCATCCAATCGTTGATCAAGTGCAAAGACACCCTTGTGTCTCTAAATGTTGCTCATTGCCGGCAATTGAACTCGTACAGAGGGTTGCAGCATTTGACAAAGCTCAAGAACTTGGATGTCTCCCGGACGTTTATCGATCAAAGGGAATTCCAGTGCCTTTCCACACTGGTTGATCTCCAAAGACTGGTTGTAAGTGGGACAGACATAAGATCACTTGAGCCCATAAGAAGCATGACATCGCTAACCACTCTTGACTTATCAAACTGTTACTGTGTGGAAAGTATCAAGCCTCTGGAATCTACCAAGGGGACACTATGCTGGTTATCTTTATACAACTGCAAAAAAGTGTTGTCATCAGGAGAAACAATAAGTGCCTTACAACAACTGAAGGAGTTGCAACATCTTGACTTATCGGAGGATGACCCAGACGAACCTGTGAGGTTTCGATCAGGGTGGGATGTACCCCTTGTTGTTGCAGAGGTCTTGGAAGAGTTACTTTCCTCGCTTTCCAATTTGAAGTCATTGGACATTTCAGGTAATGCAAGGTTCAAGTTTGAGCACCTTAAGCTCTTTGATAAATATCTCAAACCGAAGCTCAGTTTTCTTGGATTGTTCATGACAGACATGTGTCGTTACCCACAAATTCCTGCAAATCAGGTATCAGGAGATGCAAATCTTCAGCAGATTACACTATCACTGAAGCTGTATAAGACCCGACCTAATTTCCTCATCAATGCATTGCAAGCTGTGTTTCACCTTGCCAGAGAATTACCAAGAGATCCAGATCTGGATGTGCAATTGCTTTGTGATCTTGTACTGACTGCCATGGAAACTCACCCTTCAGAGAAGAAAATTCAGCTGGCTGGAAGtgccTCATTGTACCATCTGTCGAGAGACAGTGATCGTGATGACCCCAGCTGGAAACTGTCTATGGAATTGAAAAGACGTGTCATTGAAGCTACTCTTGTTGCTATGGAACGTCACGTTTCAGAATCACAGGTTTGCAACTATAAAAGAGTGGTTGAGCTGTTGTTGAGGGCTGCTGTGGTTCACAAAGAAGACTTGATCCAAAGGATGGCAATTGGACTGTGTAATCTGTTGGTGTGCCAGGTGCAAGACTCCCAAAAAATTGTTGTGGGTAGAGATCTGAATGGAATTGAGGAAGAGGGTGGAGTTCTAGAGCATTGTTGGAGTGCATTGTGGAACGTCACAGATGAGACGCCTGAGAACTGTGCCCTGTTCATGGAACACGGCGGTATAGAATTATTCATGGCGTGTAAAATGAAGCTTAGTGGACAAAGGGACCTCGTGCGTAACATGTTGGGTCTTATGggTAATGTGGCGGAAGTGCCAGCACTGAGGTGCAAACTCATGGCGTTGGCACATGTATTCTATGATCTACTGGAGTCTGACAATAATCAAGATGAACTGGAAGTGACGTACAACGCCGGAGGCATAATCAGTCACCTGGCATTCGACGGGCCAAGTAGCTGGACAAACACGGTGGTGTCACGGAACCAAGCGCTTCGGAGACTGGAGGAGACGATTGAGACATGGGATATCACAGCGCACCGCCAAATGAGCTACCGGTCATTTGCTCCAATTTTAAAATTGATATCTGGGTGTGACGTCTCAGCAATTCATCATTGGGCCACGTGGGCGTTAGCTAACCTGTGCAATGTAGATGcggaaaaatattgcaaacttGTTCGTGATGAAGACGGGGTTAGTCAATTACAGAGTGTCGCGGAGAATCCTCGAACGTCTTCACGAGTAAGAGAACTCGCCCAGATGACCCTGGACAAGTGCCGCATGCACTCGGGAAACACTGTATAA

Transcript

BRAKERYMET00000021386

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z7L7	Protein zer-1 homolog OS=Homo sapiens OX=9606 GN=ZER1 PE=1 SV=1
Q5RAG3	Protein zer-1 homolog OS=Pongo abelii OX=9601 GN=ZER1 PE=2 SV=1
Q80ZJ6	Protein zer-1 homolog OS=Mus musculus OX=10090 GN=Zer1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001915 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12799 all species →	LRR_4	Leucine Rich repeats (2 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR051341 all species →	Family	Zyg-11-related ubiquitin ligase adapter protein	Interproscan
IPR025875 all species →	Repeat	Leucine rich repeat 4	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12904 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031462 all species →	Cellular Component	Cul2-RING ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10350	ZYG11; Zyg-11 protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.