Gene detail

Detailed information of BRAKERYMEP00000021472.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044175027.1, LOW QUALITY PROTEIN: short transient receptor potential channel 4-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000021472

ATGCAAGTAGCTTATGAGCCGCCAGCCACAGCTGTGAATCTCGAGGATCTAACGGATTCCCCTCCAAGGGATGCCGTTCTGACTGAGGATCAGAGTGGCTTTCTTGACGCGGTTCGAGACGGAAATGATTGCGAAGTAAGGAGTTACGTTTTGGAGAAATCAGTTGATGTCAATTGCACTAACTTGGTCGGAGAAACCGCTCTGCAAATAGCAACAAATAAGAGCCGTCACGAAATTGCTAAGTTCCTCGTCGAAAAGGGAGCTGATGTGGGATTCGCCCTTCTGCAAGCCGTGGCTAAAGAGTCGGTAGATTCGGTGAAAGCATTACTCGACCTCTTGGAGGACTCAAAGGCAAAAAGCGCAAGAACAAGCACCGGCACTTTATCGAACCAGAAACGTTTAGGAGCGCTCTCTAAGCCATACAGTAGTTACATTTCGCCCTTGATGTTAGCAGCTCAAAATGACAGTCAAGAGATCGTTAGGCTCTTTCTTGAAAGGGGCTACACAATCGAAGAACCACAGTTCCATAACGGATCTCGTAAATGCAGCGACTGCGAAAGCGGAAAGCGAATAGGTTGCTCACTCTATCGTTCACACAGCTACCGAGCGCTCGCAAGTCCTGTTTACTTATGTTTGTCTTATTTGCTCGAGAAGTcgaccgaagaaaaaaacatcaaatcgTCCAAGGACCCTATCGTGCGCGCGTTTCTACTTAATAGGAAGCTTGAAAATCTCGTGGAGACGCAATACGAATTGAAGAACGATTACAAAAGACTCTCCAACCAATGTGAAGAATTTGCCGTGTCCCTTCTTCAGAAATGTCGATCGATGGAAGAAATCAGCTGTGTAATGAGTGTTCCCGGAATAGAGCAACTGGAGCATGTGCAAGTCCGAGGAGGCGAAGAAGCTCAGAAGCTCAGTGTGTTAAACTTTGCAATTGCCAACAAAAATGAGAAGtttgtaGCTCATCCTTACAGCCAGTTGATGCTGAATTCTGTTCTATACCGTGGTTTAGCTGGATGGGAGGAACGGAGCTTTTTGACCAAGATGCTACTTGGCTTGGTTTTTGCAGCACTGCTACCAGTATTTGCCCTGTGTTATTTCGTCGCGCCCAATTGTCAAATCAGCCAACAATTAAAAAAGCCTTTCTTTAAGTTTATGAGCCATACCAGTTCGATCGTGTGGTTCCTTTCGTTGCTAATTTGTTCTTCAATTCAAGACAACTTTTTTGATGTCCTTGAGTTCTCACCCTTGGACAACTTTTTTGATGTCCTTGAGTTCTCACCCTTGGATGTTCTAATAACGTTGTGGATCGCGGGCATGCTGTTCCAGGAAGCAAAAGAAGCCTATCGCCAGGGAAAAGAGCGTTACTTGTCACAGTACTGGAATTTAATCATGCTATTCGTGTTGGGTCTCTTTGTGACCTCGGGAGTTTTCTGGCTCATTGGTTATTTCATGAACGTGGCGGAAAGAAACTCCTGGCAGTTCCCCGTCAATGATGTTTTCGAATCCAGTTCCAAAGAAATAGCTTATCGATTTATCCTCTTGTCCAACGCTTTCTTTTCGATCGGCATGGTGTTGAGCTTCTTTCAGGCCTCCAATGCCCTCCAAGTCAGTTCCGTACTGGGTCCCCTACAGCTGTCACTTGTGAGTATGATTCGAGACATCATCAAATTTTTGTTCCTGTTTCTACTGCTATTCCTGTCGTTTGGCTTTGCGGAGAGAAAAGTTTACTCGCGCTATGTCCAGGCTAAAGAACAACTTGCTGGAAATAAAACGGAACACGAATTTGCCAAaaGTACAGGAAGCTTGCGATATTTGTTTTGGAATTTGTTTGGGATGTCTGAGCTAGGAACGTTACAGACTGATGAAAACTTCATCATCACGCAGTACACTGGCGAGTTGTTGCTTGGACTTTACGGCATTGCTTCTGTTGTGGTGGCTATGAATATGCTTATAGCTATGATGTCCAACTCCTATCAGAGAGTTGCGGACGACGCAGACATTCAGTGGAAATTCTCAAGAACTCGAATGTGGATGCCGTATTTAGACGAAGGCGATGTAATGCCACCTCCATTCAACCTCATTCCCCCGCCGCACTTGTTGTTTAAGCTCTGTCGGAAACTATGCGCTGATCCTTGGACCTGTTTACATGGACAAAACGGATCAGTGTTCGGATTGAGTGATACAGAGAACGTACGAAAACGCCACGAACTGATGAAGCTCTTGATCCAGCGATATCTCCTAACTTTTGCGAAGACAAGGAACCAGACAAAGCAGCCTACCGAGAGGGATGAGAGCAATCCACTGAAAGATCAGATAACTCTGTTATAA

Transcript

BRAKERYMET00000021472

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JMI9	Short transient receptor potential channel 3 OS=Rattus norvegicus OX=10116 GN=Trpc3 PE=2 SV=4
Q9QZC1	Short transient receptor potential channel 3 OS=Mus musculus OX=10090 GN=Trpc3 PE=1 SV=2
Q9Y210	Short transient receptor potential channel 6 OS=Homo sapiens OX=9606 GN=TRPC6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001051 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF08344 all species →	TRP_2	Transient receptor ion channel II	Family	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR002153 all species →	Family	Transient receptor potential channel, canonical	Interproscan
IPR013555 all species →	Domain	Transient receptor ion channel domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10117 all species →	TRANSIENT RECEPTOR POTENTIAL CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015279 all species →	Molecular Function	store-operated calcium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0034703 all species →	Cellular Component	cation channel complex	Interproscan
GO:0051480 all species →	Biological Process	regulation of cytosolic calcium ion concentration	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0070679 all species →	Molecular Function	inositol 1,4,5 trisphosphate binding	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000021472.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.