Gene detail

Detailed information of BRAKERYMEP00000021744.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3142323.1, unnamed protein product [Porites lobata]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000021744

ATGCAGAATTCAAATGAAGTTATTATGGAGCGATCGAAGCCCGTGAGCAATGATTTGATGGCGGCGAGTGCTTCAGGCACTGTTGACATAACCTCTGGAACACCCTCAGAACTACTTCAGTCCTCCGCAATCTCGATATCTTTGAAGACTGCTGCATCTCCGAGTCCAGTGGACTGCGAGTTAGAAGAAGCCGATGGGTCGAACGCTGGCCTAGAACAAGCGTTACGGTCTTTTGTGAGcaaagaaattcaagaaaGAATACAAAAAATATTGGAGGAGGTGCAGCAGTTGTCAGACACTGAGAAATTGTTACTTTATCTGCGGCTTCCTGGAGAGACTGCTTCTGATTCCAAAGATGACTTTGATCAAAATCAAAATCTTCCCATTTCAACTACAAGGGCTGAGCAAACACAAGCATTTCACTGgATCCGCTGTCACTTGGAGGAGTGTGACAATAATTCTACTTTACCCAAGCATGAGGTCTATGATGAATACAAAGCACACTGTGAAAGCATGAATGCTGCTCGGACACTGAGCGCACCGGACTTTGGGAAGATTATCAAGTGTGTATTTCCTAGAGTGAAAGCAAGACGGCTTGGTACACGAGGGAATTCTAAATACTGTTACAGtggaatccaaagaaaaaagaatgtcaaaccACCAACTCTGCCATCATTACAGGTCCCACcagcaaatgaaaaagaaaagAGTTCAACAAATGCAACAAACAGTTTGAGCGGAGGAGACAAGATAGAAGAGGATCAGACTCTCTCTGCAGCTTGTTTGCTTGTGTGTGAGTGGGCAAACAAACTTCTTGGCAGAGTATTCAGTACCCTCATTGAGTTGGCCAGGTTTCTTGTTGGTGGAAGTTATGTTTCCAGCAAATCTATGGCAGCATTCGTGGTAATGTCCAGCAATGACCTAAACACCCCTCAGATCAGTCATTCATTGGTATCTTTGATGACACCATTAAAACAAGTCGAAGAACAGATGTTACTCACACAGAAAAGAAGGCAGTCACAGCAGCTATTAAAAAAGTTACCACCACGGCAGAAGCAAATTCCTACTAATACTATAATCCAGCAAGGAACTGGCTTGTGCAACACACCAGCACAGTTGCTGGGACATAAGGCACTGgtGAGCATATCAAGTCCCCAAAAGCCTCCTCACAAACAGCCATTACACATTCAACCTAAGCCAATACAGCCAGCACTTCAAAGTCCTCCTGCACAAATAGGATCATTCtaccaacagcaacaacaacaacaacaacaacaacaacaacaacctggTAACCCTAGCACATCACCTAGTGGCTATGCCTCTAAGATTAGACCAGTTACACCATCCATCATATCACCTACCACACCTATTCAGCCCTCAGTGCCTCAGACACTGTCACCATTCCAGTCATCCCCAAAGTTCAATACTCCAGGGACACCACAGAATCGTGCAGTGACACCAAGCTCTGCAAGTGCAGCCCCCAGACACACACCAAACTCAGCTGAGCCTACACGTTTCCTGTTCACCCCAATCCCTAGCGGCTCTCAAGAACAGAGGGTGAATAGAGGAGAAACAAGCCCTCCAACACTGCGACCAACAGCAACCCACCCTAGCCAACTCATTAACAGTGATTGGTCATCGCAAGGAGGGCAGCAGTTGGGAATCAGTGAAGTGCCCATGTCACCAAGTAAACAACCCCGACTAATAAACCAAAACCTACCATCTACACCAACATCAAACCGCAGACCTGGCTCATTTGCGTACCCGTTACCATCACCAAGGACTCCACAACGCATTGCACCACAGCAGTATGTTACATCACCAACAATGCCATCTCCTGGGGTTGGACGTCAGCTAAACCCCATCTCTCCAAATGTTGCACAACGAGGTCAGGAATTTGTGCTTCCAATGATGACAAACATGGAAAGTATGGCTCCCACAGGATTTTCGCAGAGTGTAAATACAAACAGCACAGCATCGTCCATTGGTGATGTGCACATGTCACAGCAACATTCCAAGCAGGGGGCTCCTGTACTATTACCAAAGTCCTGCAGATACAGCAGTGGTGCTGACAATGGGCACATGCAGCAAGCCTCACTTATACAACATCAGACAACAGACTATTCATCAGAACTGGAATCAATCTGCAACCAGGCCACAAGCTCTGCTGGCCAAATGCCTCCACCATCATATCAGCGCAGCCAATCAGTGCCACCCTTAACACAACATGCTCTGGCAGACCAAAGGTTCCATCCACTGACACCTCAGACCACTCCTCATCCTCAACATCTTACCCCATCTCCCCTGGATACTTCAAACCAACCTTTAAATGGTTTAAAGGAGCTGCGCAACAGAGTTCTCCACGGCGATGTTAACAACAATGGCTCACGGCCGACACAGAATGATAGTGCTTTTTCGGCGCGAAGAAATCTCACTCCTATGCTCAATGCTGAACATTCAAATATGAATACCTCGAACTGGGAAGTGCAACCAGTGCAGGCAAACCACCCAAACAGAGCAGGAGAGGATCATGAAATGACAATTCTGGAAAATAACTTGACTTTTGCAGATCTAAGCAATGAGAATGATGGGACACTTTCTGATCTGAATACGCTGGATGATGCTACAACTGAGGCAGTATTAAGGAACATTTGTAACAATACATCAGGAGTATGGCCGACAAATGATGTTCCTACTTGGCCAAGCTCGCAAGCATTGCAAATTATGGATTAG

Transcript

BRAKERYMET00000021744

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1L8H0H2	DNA-binding protein RFX7 OS=Xenopus laevis OX=8355 GN=rfx7.L PE=2 SV=1
Q2KHR2	DNA-binding protein RFX7 OS=Homo sapiens OX=9606 GN=RFX7 PE=1 SV=2
F8VPJ6	DNA-binding protein RFX7 OS=Mus musculus OX=10090 GN=Rfx7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006718 (this species only)
Transcription factor family	RFX · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18326 all species →	RFX5_N	RFX5 N-terminal domain	Domain	Interproscan
PF02257 all species →	RFX_DNA_binding	RFX DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003150 all species →	Domain	DNA-binding RFX-type winged-helix domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR039779 all species →	Family	RFX-like DNA-binding protein	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12619 all species →	RFX TRANSCRIPTION FACTOR FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09175	RFX7; DNA-binding protein RFX7	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.