Gene detail

Detailed information of BRAKERYMEP00000021945.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_020600548.1, U3 small nucleolar ribonucleoprotein protein IMP4-like isoform X1 [Orbicella faveolata]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96G21	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens OX=9606 GN=IMP4 PE=1 SV=1
Q5R947	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii OX=9601 GN=IMP4 PE=2 SV=2
Q8VHZ7	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus OX=10090 GN=Imp4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001859 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04427 all species →	Brix	Brix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007109 all species →	Domain	Brix domain	Interproscan
IPR044281 all species →	Family	U3 snoRNP protein/Ribosome production factor 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22734 all species →	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030515 all species →	Molecular Function	snoRNA binding	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0034457 all species →	Cellular Component	Mpp10 complex	Interproscan
GO:0042134 all species →	Molecular Function	rRNA primary transcript binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14561	IMP4; U3 small nucleolar ribonucleoprotein protein IMP4	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.