Gene detail

Detailed information of BRAKERYMEP00000022061.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: KAJ7371245.1, E3 ubiquitin-protein ligase herc2 [Desmophyllum pertusum]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000022061

ATGTGGCTCGTTTTCAGGCGGCCCTCTGACTGGACGGTAACCTGGGGTGGTAGTGGAACAATTTACGGCTGGGGGCATAATCACCGCGGCCAACTGGGAGGAATTGAAGGGGGGAAAGTGAAGTTCCCTCAGCCGTGCGAGGCTCTCAGCGCTATCAGACCTGTGCAGATAGTTGGAGGCGAACAGACGCTGTTTGCAGTGACTTCTGAAGGAAAGGTTTATGCTACTGGGTACGGTCACGGGGGGCGCCTGGGGCTTGGCGGAACAGAGACGGTGACATCGATACGCCTTATTGAATCTTTGCAACACGTAGTCATCAAGAAAGTCGCTGTGCATTCTGGGGGAAAACATGCCATGGCACTTTCCATGGATGGTGATGTATACTCTTGGGGAGAAGGAGATGACGGAAAACTTGGTCATGGGAACCGAAGCTCCTGTGATCGCCCGCGTGTCGTTGAAGCCCTCCGTGGAAAATCGCTCGTTGACATAGCCTGTGGAGGCTCGCACAGCGCCTGTGTAACAGTCACTGGGGAGCTGTACACATGGGGCAAGGGGCGGTACGGACGCCTGGGGCACGGTGATAGTGAAGACCAATTACTGCCAAAACTGGTGGAAGCACTGCGCGGACAACGTGTCATAGACGTGGCTTGTGGTAGCGGCGACGCTCAAACGCTGTGCTTGACTGATAACGATTGTGTGTGGTCGTGGGGAGACGGCGATTACGGCAAACTTGGCCGCGGGGGAAGTGACGGTTGTAAGATCCCAATGAAGGTGGATTCGCTTTTAAGGGCCGGTGTGTGTAAGGTGGAGTGTGGATCGCAATTCTCTGTAGCCCTTACCAAATCTGGTGCCGTGTATACTTGGGGTAAAGGCGATTACTACCGCCTCGGTCACGGCTCCGATGATCACGTGAGACGTCCCAAGAGAGTGGCGGCacttcaaaacaagaaagtggTCGCTATAGCAACGGGATCCTTGCACTGTGTGGCGTGTACGGACACCGGTGAGGTGTACACTTGGGGTGATAATGACGAGGGTCAGCTTGGAGATGGGTCAACCAATGCCATACAGAGACCAAGACTGGTTACAGCGCTGCAGGGTAAGAAGACAAACCGCGTGGCTTGCGGCTCCGCTCACACCATTGCCTGGTCCACCACGAAACCTGCCAATGCCGGTCGTCTGCCCAGGGAAGTCCCGATGGAGTTTAATCACCTGCAGCTTATCCCTATGGAATCTCTTCGCAATCGTCTGATGCTCCTCCATCACTTCTCTGACCTTGTTTGTTCCTCGCTTGCCATGTTTGATCTTCACCCTCGAGTGAGGGAGCATATTGGGCAGGGTCCTTTGGTAGCTTTAGACGCTTTGAGGGGCGTTTTAATACCGTCCGGAAAGGAAGGAGCTTTTCGTAAAGTTGTTCAGACAACGATGGTTCGTGATCGGCAGCATGGTCCTGTGATTGAACTCAATCGAATACAGATTAAGAAGTACCGTTCGAAAGGGGGTCTTACCGGCCCGGATGGCTCCAAATCAGTATTTAGCCAAGTTTGTTCCAAGATGAGCAACTTCGGTTCCGACAGCCTGTTCCTACCACACCGAGTATGGAAAGTTAAATTCATTGGCGAAAGCGTGGACGATTGCGGAGGAGGCTACTCTGAGTCCATCGCTGAAATGTGTGATGAGCTTCAAAACGGCTCTCTCCCCTTACTGATAGTGACGCCCAACGGAAGAGACGAATCTGGCGCTAACCGAGACTGTTTCATCCTCAGTCCAGACGCGTGTTCCCCTGTGCATCTCGGCATGTTCAAGTTCTTAGGTGTTTTGATCGGCATAGCCATCAGGACGGGCAGCCCGCTCAGCTTGAACCTCGCTGAACCTGTCTGGCAACAGCTGGCCGGAATGTCTTTACGAGTGACCGATCTTGCCGAAATTGATAAAGATTACGTTCCCGGTTTAATGTGCATCCGCGACATGGAGCGAGAAGCGTTTGAAGCCATGGAGATGCCATTCAGTACTCCAAGCGCCAGCGGTCAGGAGGTACAGCTGCACAACAAGATCAAGAAAATAACACTGGATAACAGGGAGGAGTACGTGCGATTGGCGCTACATTACCGCTTACACGAATTTGATTTACAGGTATCCGCTGTTCGCGAAGGCATGGCACGAGTAGTCCCAGTTCCCTTGCTCTCGTTATTTACCGGACCAGAACTTGAGACTATGGTGTGTGGCAGTCCCGATATTCCTCTGGACTTGCTTAAATCCGTGGTCACATACAAGGGAGTTGACGCTACGGCGCCATTGGTTCGTTGGTTCTGGGAGACTCTGGAAAGTTTTTCTAATGCCGAGCGTTCACTGTTTCTTCGGTTTGTCTGGGGGCGAACACGACTCCCGAGAACTATCGTTGACTTCCGTGGAAGGGACTTCGTGTTTCAGGTGCTCGACAGATACTCTCCACCAGACCACTATTTGCCGGAATCCTACACTTGCTTCTTCCTTCTGAAGATGCCGCGATACTCATGTCAGCGTGTGCTCTGCGAAAAGCTCAAATATGCCATACACTTTTGCAAGTCCATCGACTCGGACGACTACGCCAGGATCGACCTGACTGGAGAGCAAGCTGAGGAATATGATACTGATATTGAAGCGTTTTAG

Transcript

BRAKERYMET00000022061

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95714	E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2
Q4U2R1	E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3
Q9VR91	Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster OX=7227 GN=HERC2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002667 (this species only)
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR051210 all species →	Family	Ubiquitin ligases and GEF domain-containing protein	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22870 all species →	REGULATOR OF CHROMOSOME CONDENSATION	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000022061.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.