Gene detail

Detailed information of BRAKERYMEP00000022671.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3134503.1, unnamed protein product [Porites lobata]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000022671

ATGACTTCGGATATCAAGAATACGTGCATGTCATGCCCAGTGTGTGCTCAATATGCTAGTCAAGCGCCTAAAGAGCCCATGTTTAGCCATGACATTCCCGATAGACCATGGTCCTTAATTAGCCAAGATATCCTGATGTGGGATGGAAAATGGCACTTAGTCACTACATGCCACTACAGCGACTGGATTGAGATTGATATACTACCCGATACACCCACAGCAACAGTAGTAGAGCTCACGAAAGCACACTTTGCAAGGTTCGGGATACCTGATCGCCTGGTCTCAGACAATGGGCCCCAGTTCATCAGCACTGAGTTCAAGCAATTTGTCTCTGAGTATGGGTTTCAGCATGTGACCTCCTCCCCATATTGGCCACGAGGAAATGGCAAGGCAGAAGCCGCAGTTAAAACAGTGAAGAGGATGTATCAAAAGAACAAGGACATTCATCTAGCTCTACTGGACTACAGGAATACTCCCCAACAGGGACAAGAACACTCTCCTGCTCAAAGGCTACTCTCCCGCCGCACAAGGGTGCTCGGAAGCTGCCCCAGTGGATGGGAGAAATTTGATAGGCACTGTTACCTGTTCCGAGATGAAGATCGGGTGACCTGGGCAGAAGCCACAGCCACTTGCCAAAGGCAAGGTGGCAATCTGTTGAGTATCACATCACGGCAGGAACAAGACTACATTGCTTACCACTACCACTATAAACAACCAGGAAACATTTGGATTGgtttgaATGACCGAGCACTGGAAGCGGGTTATACCTGGAGCGATGGGTCCCCTGTTACTTTTCTTAACTGGCATCGCGGCGAACCTAATGACTATAGCTACAGCGAGAACTGTGTTGAGATGTATCCAGACTCCAGGTGGAATGATAAAGGGTGCACCCACAAAAATGGCTACATATGCAAACAGCCCTTAGAATGTTCGAAGGCACTAGGCATGGTCAGCGGTTCCGTAAGAAATAGGCAAGTTAAAGCCAGCTCTAGTGTCTCCCCTGTGTACAGTCCTGGAATGGCGCGTCTTAACTCCTCATCTGCCTGGTGTGCTGCAAATAACGAGGCAAATCAGTTTATTGAGgTGTTTGTTGCAAATCGCGACGCAAACTCAATAGTGACTTCTGCCCTTACACCTTCAATCGATACACGTTTGATCCGGTTAGTTCCAGTCACCTGGACGGGTTCCATCTGTTTGCGAATGGAGTTTTATGGCTGCCCTTTTGCATGTGAGACGCCGCTGGGAATGCAGTCAGGTGCAGTGAAGGACAGTGATATATCGGCGTCATCTAGCGACAACTTGCACAGCGTTACCAATGCTCGCCCTTCCAGCAGCATGGGCTGGTGCGCAAATGCATCTGATAGCCAGCCATGGTTGCAGATATCCTTTCCCAATCTTGACACAaagattacaaaaattacaaccTGGGGAGATGGGAGAGGATCCGCAGGCTATGTCACAGTCTACCGGCTGGAGTTTTCAGATGTGGCTGACATCAACGCTTCGTCAGACTACAGAGAAGGCGGGAAGATTAGGAATTTCCGCGGAAACCAAGATGTTGTCAGTCCAGTGACTCATCGCTTGGCggagccaatcataacgcgtAAACTACGCGTGAAGCCGCAATCCTGGTCAGCGGGTGGAGCTTGTATACGATTGGAAGTCTTCGGATGTGAAGATGGTTGTGATACTCCTCTGGGGTTAAGTCATGGAGTCATCGAGGATTCAGCGTTGTCAGCGAGCTCGTCACTGGACCAAGCCCACGCGGCTAGTGAAGGCCGTTTGTATGGACTTACTGGGTGGTGTGCAGCCGATGGCGATTCGGAGCCGTTCTTTATTGTGGATCTCGGAAGTAGGATGAAACTCCGCAAGGCTTACTTCCAGGGTGCCAAGGATGGTAATGGCTTTATAAAATCGTACAGAATTAGCACAAGAGATGATGAAAGCCTGCCATGGAGACCCTTCTCACGATCGGACAGTTCAAGGGTCTTTTTAGCTAGCAACGATAACTCCACAGTGGTGTCCAATGTATTTGCTCCATCCTCTCTGCATGGACGATATTTCAAGATTGTTCCCATCAACTGGAATATTCGACCTTGCCTTCGCTTGGAATTATTTGGCTGTAGAACTAaTTTTCCAACGGAACCTGTTCCAAGCACCATTGCAAGCACCACTGCAAGCACCATTCCAAGCACCATTCCAAGCACCTTTCCAAGCACCATTCCAAGCGCCATACCTCCTTCTGGAAGACTATTATTCTCTAAAGGTATTATCCTAGAGCATGATGTTCTGCTTGATGGTGTGACTGTATTGTGA

Transcript

BRAKERYMET00000022671

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70490	Lactadherin OS=Rattus norvegicus OX=10116 GN=Mfge8 PE=2 SV=1
P21956	Lactadherin OS=Mus musculus OX=10090 GN=Mfge8 PE=1 SV=3
P22897	Macrophage mannose receptor 1 OS=Homo sapiens OX=9606 GN=MRC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001005 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR050633 all species →	Family	Neuropilin/Multicopper Oxidase/Coagulation Factor	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46806 all species →	F5/8 TYPE C DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000022671.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.