Detailed information of BRAKERYMEP00000022889.1 in Astreopora myriophthalma

Genomic Location: BLFK01000662.1:724116...735690
NR annotation: XP_029206751.2, CSC1-like protein ERD4 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9C8G5Hyperosmolality-gated Ca2+ permeable channel 3.1 OS=Arabidopsis thaliana OX=3702 GN=OSCA3.1 PE=1 SV=1
Q9SY14Hyperosmolality-gated Ca2+ permeable channel 1.7 OS=Arabidopsis thaliana OX=3702 GN=OSCA1.7 PE=1 SV=1
Q9FVQ5Hyperosmolality-gated Ca2+ permeable channel 1.8 OS=Arabidopsis thaliana OX=3702 GN=OSCA1.8 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001557 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13967
all species →
RSN1_TMLate exocytosis, associated with Golgi transport FamilyInterproscan
PF02714
all species →
RSN1_7TMCalcium-dependent channel, 7TM region, putative phosphateFamilyInterproscan
PF14703
all species →
PHM7_cytCytosolic domain of 10TM putative phosphate transporterDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032880
all species →
DomainCSC1/OSCA1-like, N-terminal transmembrane domainInterproscan
IPR045122
all species →
FamilyCalcium permeable stress-gated cation channel 1-likeInterproscan
IPR003864
all species →
DomainCSC1/OSCA1-like, 7TM regionInterproscan
IPR027815
all species →
DomainCSC1/OSCA1-like, cytosolic domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13018
all species →
PROBABLE MEMBRANE PROTEIN DUF221-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005227
all species →
Molecular Functioncalcium-activated cation channel activityInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K21989TMEM63, CSC1; calcium permeable stress-gated cation channel-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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