Gene detail

Detailed information of BRAKERYMEP00000023316.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029195887.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114961386 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000023316

ATGTCTAATTCAGCATCACTGTTACAAGAAATTAATTGGCTGAAGGAAAATGGATATCCACAAACCAATTTGaTGGTTGAGGTGAGTGCAAACCACAGTATCCTTTGCAACGAAAAGCTGTTTGTTCCACATATAGACAAGAACAAGCCTGTAACATGGATTTTTACAGTCAAGTCAAGTAGTCGTGTAAGCAAATGGTGTAGATTATGCCGTGTGTTCACATTGGATCCTTATCTACCGGAATATAGTATAGCACAGGTCAAAGCAGGCAATCACGAGATGATCTTACCTCAAGGGAGTCAGGAATGGGAGTCAAATAACAGTCCTCGAGTAAGGACGTACCAAATTACACTCCGCTTTCAATCCTCTGACTATGGCAGTTTTCAGCAGCGACTTGTGTTTGATTTTGCTGAGCGTCCTTTTGTGTTCAGACAGCTTGAAGTGGTTGTTGCTCCGGAACAGTCTTTGCTTTACACAATTCAGTACCCAGTGGTTTGTGATGAGGATAGTGAACTGTCATGGCTGGCTAAATATCCCATGATTCCTTTCGACCCCCAGGAAGTGCAAGCTTCTAGAAAATCTGAATATCCTCTTCCACCCAACATGGCAACAGCTTTGGAGTATGGCCATTTTGATCATCTTGATGATAAGCTTTCCCGTGAACAGTACAGGCAGCGTCTCCATATGCTTCTCCACATTGAGGAGTATGAGCGTCGGCGTCAAATGACCAGACTGACCATACACTGTTCTGATGTTCTCCACTGTCTTCAACCCTGTGCCACTGATCCATCGCAGACTACCATTGTGCTACCAGTCAATGAAGACTTGATGGATGATGCTTCTCTGTTAATCAGTCGCGGTGGTAACGCTTTGCTTAGGATTGAGCCACATGGCGCCCAATCTGTGGTGTTATATGAAGTCATTGTGGAGACTTTACGAAGGAATCGTGTTTTACTGCGGGCTAGCAGTGAGCTGCAGACGGTTTTGAAATGTAGAAGACCTCTGCCGGTGTCAGTTTGCTTTAGATTCGTTGATACATATCAACACATGCATTGGGCATTGGATCATATCAACCTTGACGTGGTCTTCCCACTGGTTCCTGAAGGCATTACAGAACAATGGTCCGTTTCGAATTATCCCATTAGCTCGCGACTGAACAAGTCTCAATCGTATGCGTTAAGACAAATGGTATGTCCACAACCTGGACCACCTTTGTTGATGCTGGGTCCTTTTGGCACAGGGAAGACTAGAACCATCGCTGAAGCTGTCAAAGAGCTCATTGCCATGCAGCTGAACAGTCGAACAACAGATTGCCGCATCCTCTTGTGCACGCATTCCAACAGTGCTGCAGACCACTACATCAAAAACTACCTTCATCCCTTTATAACAACATCTGGTGTTCTTCGTTCAAGATTCAAGCCACTCCGTATATGCTGGGAAAACCGTTTCATAAACACAGTCCCTGATGAGGTCCTACAGTATTGCCTTTTGGATCTGCACACTGGCAAGTTTGCTGTGCCAAGCCAGGAAGACTTGATAAGTCACCGAGTGGTAGTCACTACGCTAGTAACGGCAGCATCGCTTGCAAAGCTTGATCTTCCTCCGGGGTTTTTTACACACATCTTTATTGACGAAGCTGCACAAGCGATGGAAGCTGAAACCATCATCCCATTGTGTCTAGCAGGGCGGAATTCCCAGTTAGTCTTAGCCGGAGATCATCTGCAGctgaaTCCTCCCGTCATGTCGACAATTGCCCATCAACTTGGTCTTGGCCGTAGTCTCCTGGTTCGCCTGTATGAAATGTACCCATCAATGTCGAAATGGAAGGTCTTGCTCCTGCAGAACTACCGTGCTTACGACGACATTGTTGATATCCCATCTCACCTGTTTTACCAAGACACACTCATTGCGAACTTGAAGCGCCCACCCAGCCTCCCTGAGTATGCCGTTGTTTTCTATGGAGTGCACGGACAAGAAGAGATTGCAGACGAACCTCCATCCTTTCTGAACAGGGGAGAAGCTGCTGAGGTCACTGACCGCGTGCAAGATTTGGTTAATCACTGGCCAGCCGAGGTGTGGGGAGATGCGAACCCGGCGAGAATTTGTGTGCTGGCACCTTATGCTCCTCAGGTGCGGGAAATTCGGAGACTTCTTCGTTCAAAGAGTTTAGCTAGCGTTCAAGTAGAAGGTGTTAATAACGTGCAAGGTAAAGAACGTGATAAGCTCTTATCTGGGAAGTTGGAAAACATTGAAGAACAGATTAGTGTCTCAGAGAAGGAAGCGGAGCTCCTTCAGTTTCATATTCAACAGCACAGTGTACTTCGAAGTCTTTTGGCTTGTGAAGACTCTGAAGACACTGATGACACTGGTGATGGCTTGGAGGCTTCTGAAGAGGACTCACCATGTCCAGATCTATTAGCTGATTATGTTGTCTCAGACACAGACGAGTGGTTCAAAGCACAACAGATGGACCCCATTGTCCAAGATTACATCAAAGCTTTTGAGAAATTGTCCTCCAGGAATGACCTTGTTTATGAGCACAGCCTTGCCCCTCCAGAGATAGCAGTGGGTAGTGGACCCTGTGACTTGTTTCCACGTGCCATTGAAGAGTCCTTGGCCTTAGCTGGGGACAATGAGGTTGCTTCTCCTCTACAAGGCTGGGTCTTGCAACCCAGCGAATGCACAGTTTATATCGAGATCGATTCCATCAATGAGGAGCATTTAGGGGAAGAAGAGACGCAGTCCAAGCTTGCTGCTGGGGAACTTACTGCTTGTCGTTTACACATCGACAGCTTCAGCGATGGCAATACTGCAACTGCAAAGATTTGTGATCCAAGTCGTCCTGACATTCGAATCGGTAGCCGAGTTGATATAAACAGAGCATTTAATGGAGATATGGTTGCCGTGGAAATTATCAACGGTGATGGAGGAGGCGCCGTCAAACCCCAAGGAAAGGTACGGGCAATACTGAGGGAAAATCATCCCAGAAAAGTCATTTGCAGACTCGACAGCTTTGACAAGAACATGATGACACCTATCAATAGATGCAACTCAAAATTTGTGATCCTGCAGAGTAAAGACCACAAGGGTCAAACCGGCGTTGCTGTATTTGACATGAAGGATGGACGAATTGACTTCAAGAGTTTTGTTGCAGAAACGGAGGGCAAGTTGTTTCTCGTTCAGCTGATGAAATGGGGAGCCAGCTACCGCTACCCTCTTGGCTTTGTTGTGCACTATTTTCCAGAAGGAGCTGATCCTGAGATGTCTATTACAGTTTTACTTGCAGAGCACAGTTTGCATAAACGGCACGTGAAAAAAATCCAGAATGAAGTTAAAAGAGATTTTTCACCAAAATGGAAGATTCCGTTGTCAGAACGTGTCAGACGCAAGGTGTTCTCCGAAGTGTTTAGTATCGATGCCGACTCTTGTGTTGAAGTTGACGATGCCTTGAGCGTGGGCTGGCAACTTGATGGAACTTACAAAGTAGGTGTCCATATTGCCGATGTCTCATTTTTCGTGTCTAAGGATTCCAAACTAGACCAGGCTGCTTTCTCCCATGTTGCCTCTGTGTATGGCAGCACTCAAGTGCCGTACCACAACCCTATGTTGCCGTCCTATGTGGGAACAGATCTGTGTAGTATACGTCCCAATGAAGAAAAGCTTGCTGTCTCTGTTGTATTTCATATGAATGGCGATGGGATACAGGTGTAA

Transcript

BRAKERYMET00000023316

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42694	Probable helicase with zinc finger domain OS=Homo sapiens OX=9606 GN=HELZ PE=1 SV=2
Q6DFV5	Probable helicase with zinc finger domain OS=Mus musculus OX=10090 GN=Helz PE=1 SV=2
Q6NYU2	Probable helicase with zinc finger domain OS=Danio rerio OX=7955 GN=helz PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004717 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF00773 all species →	RNB	RNB domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0035194 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000023316.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.