Gene detail

Detailed information of BRAKERYMEP00000023531.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015763737.1, PREDICTED: histone-lysine N-methyltransferase SETD1B-like [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000023531

ATGTCCTATGAACCGCCAGTTCTCTCAAGGAAACTTGGCTTTGGTGATGCAAAGGCCCCCGAAACCAGTAGTAGATTTATACAAGCCCGACTTGACCATGGAGAGAAGCCAGtGAATGGTCTAACGAAAGCAGTCCCTGAACCTGGCGACAGTGTACACCGACAAGACTTCAAACTTCTCATAGATCCCGCCATAAAGAAAGGACACTCTAAAATCTACAGATATAATGGTGTTTTTCCTGGGCAACTACCGGTTATCCCTAAGGACCCTCGCTCCAGGAGAACACGAATATGGACTCTTAACAAAGCCGACTTACCAGTTCCAAATTTTAAGGTGGACAAGTGGTACGTTGGAATTCCCCCACAACGCGAAGTTCATTTCTCAGGATTAAACGACAATGTGGACAAGAAATTTTTGGAAGGAATGTGCGAACGCTATGGTAAAATTGATGCCATCAAAATATACTTCGAcccacaaacaaagaaacatactGGAAAGGGACGGGTGACATTCGCCTCTTCTTCCGCTGCTAAAATGGCAGTCTCTAAACTGGATCACACGTCAGTCATGGGAAACATCATAAAGGCACACATAGAAACAAACACCAAAGgaGGTGAAACCTATAGCAGACAGCGTGTAACAGAGCATCCACCACCAAGGAGAAACTCTGGGCAAGACGCTAGTTTGAGCACACATTTACCCACTCCATCGCCATCAGTGGTGTCACAGTCATCCTCTACGGATGGCCCTGTACTGTCACCTTCGGTGTTATTGTTGAAAAGTCCTGCGTCATCATCAGTGCGGCTTCCAAATGACATATGGGGAACTTCACTTGGCAGTTCATGGGATAAGACAGCTATGGGTGTTAACAAGTTAACCCATAGTGGATCAACCTTCATGTCGCCTCAAAGTGGCTCATCTGCGCAGTCTACATTTGAACCAGTATCTCCACCCCATAACTTTCTGAAGAATGATGAGCCACCGCCTCCACCTCCGCCAGTCTCCAAGCCACCACCCCCTCCAGTTGATAGAGATCCACCACCATTACCCCCTAGTGAAAGAACTGGGCTCCCATCTTCCTGCATAAATTACGAAGACATATCACCTGATCCCATTTTCTCCCCTAGAGATGAAGAGAAGGAAGCATCAGCTCAAAAAGGAAAGGGTGACTTGAAAATAATGACCAAGCATCTTGAATCTTGTAGAAGGGACTCTAAGCATAATTCCTCCTCTCCTAGCAAGGCTCGCTCACCTCGCTTCAACAGAAATGAGAGTTATGCAAAAtgggagaaaaagaaacaaattgaaCGAGAAGAAAGGTGTCGTGAAAAAGCTAATGACTTTGATCGGCACAATGGGGGTTCAGATAGGGACTTGAGCTGTAAAGATGATCGAAGGCTTGAATACAAGTATAAACGAGATGGGCATTTAGATAAAAGGGACTATTACAGGTGGGATGACTATGACAGGAACAGACTTGGAGGTCGCTATGACAACAAAGATGATTACAAACATAGGAAAGATAGGTATAGTTTAAGTCCTAGAAGAGGAGATGACTGCAGATGGTCAGATCACAGAGACTCTCAGAGTAGGGATCCTAGATTGCGGGATAAAGATAGTGAAGGCAATGGTGGGAAAGACTTCCATAGTAAGAATGCAAGGCTTTATGAAAGGGGTAAGGAAGGACAAGGTGCGGAAGATGGATGCAGTCGAGATCCAAGATTAAGAGGAAAAATTATGGAAACCTCTGATATTCATGCCAGggtgaaaaaaggaaaggattGGCAGGAAAAAGGGAGCAGTTCAGAGGCAAGAGATGTTAGTAAAATTAATCCAAGAGTAGTGACTGATAGTGAAAGCCTTCCTTCAGTCAGGGTTGGAGAGAACAATGTCTATAGCAATAAAAGCAAAGATCCCAGGTTGCAAGGAGTAGTTAATGAAGAAAAAAGTAGTTATCAGGGTCATGAGTCTGGTAACTTTGAAGACAAGGACAATAGTAATCTGCCAAGAGAAAACATTGAGATCAAGGGTGAGAAAAATAGTTGTACATCTAGTATAGCAGAACCTGACAGTAACACCTCTGTTATTAGTGCAGCAGAGATTATATCATCAGTGGTAACTGGCACTTCACTGAGTGAAACAGTGGGACAGACTAAGTATTCTGATGATGCCTACACAGTTGGAGTAGAGACATATTCTGATGACGAGCCTTTACCTCCTGGTGATGAAGATGATGTTGCCCATGAAGTACAGCTAGACATTACCCGAAATAAAATCAAAGCTGCACAGAATGCTGTGAAAAAACGGAAACTCTCTGAAACTTCCTTTCAAGATGAAAAGAGGAGCAGTGGACCAAAATCGAAGAAGATACAAATAGTCCTTAAAAGTGTCCAGCTTAATTCCGCAGAAAGTGACTTGACAACCTCACCAAGCTCAGATAGTCAATCAAAACAGGATGAACCTGAGGGTGGCTGGAGCAGCTTGTCCCCTGAAGTTGCTGCAGATGTCGCTGTGGAATGTGAAGGCTCGGAAGTTAGTGATTTAAGATTGGCAAATTTGCCACTTACTGAGGACATTTCACCGTGTAATTCACCTGCTGTTGAGACAACAAGTCACATTGAATGCTGCAGTGCAACAACCTCTAAAGAACCTGCTTCTATTGACCTTTATTCTGACATTGAAGGGAATGAAGATGACCAATATGTTGGTGATGtgaacaatgatgatgatgatgccatGTCATTATCGTCCATCAGTTCAAATGAAGACACGTTAGAAGTAAATGAACCTGAGAGCAAACCTTTGCCAAAGACAGAGAAAATTTCTGTTCCTCCTCCAAATGTTGTCTTCCCACCATATCCACCACCCATATTCAATCCCAGTATACCACCTCCTCCATTCTTCAACCCAAGGGTACCTCCACCACCTTTGGTACCTGTCCCTCCTCCACCCCTTCCTGCGCATCCATCAGTTCCACCACCTCCTACGCTTCATCCATCTTTACCTGCAAGACCTATTCTACCCCCAGCAGTACCTCCCCCTGCCGGACAACCTATCCCAGTCCAACTTCCACCCATTCCTCCCCCCATTATAGGTGGTTCTTCTGGATTCTATGACCCAAGGGTTCCACCTCAAATTCCAAATGCTAGAATTATTAACAGCACAGGTTTTGGCTACCAAAAAGCAGAGAACATGAAGCCTTGGAGAACTGTTATCATTGATGAAGTTTATAGGAACATATCTGGTGAACTGGATACTGTGCTCAAGAGAGACATCTTTAAGAAACTTGTGGAGGCATCTGCATTTAAAGCTTTGGAGTCATGGTGGGATAACAAGACCAAGCCCAAGACAGTCTCACAGACAACTGCAAGTTCCTCAAGAAACCTTCCAATGTGCCCCAACCCAGCCTCCACTGCAGACATTCCATCAAACCTGGGACCTGGAACTTCCTCAATTGGGCCAAGTCCTTTTGAGAGATCCCACAGCATGCTTTTGGGGTTGCGTGCTTCACTTCCAAAGTTACCTTCTTTTAAAGTGAAGCGGACACCAGAACACTCTAAAGCTGTCAAGCTGGACGGTGTATCAAGAAAACGAAGCAACACAGAATCCTCAGAAATTCTTGAGAGAGAAACCAAAAAACATGTCACAGAGGAAACAGACCTGGAAACGGATGTTGACTTTGAGAATATCTCTCGATGGGACAAGCGACCACGCCCAAATAACAGGTTGGAGGAAGGTGAACGTAGTCAGTCACCATGGCAGCAACTAGATGATAGTATGGATGTGGCTCCACGTGCTACAATAGTTCGATATACAGAAGCTGAGGAACGACGGCCCAGTACAGGTTCATCCCTGTATCACAAGGTGTATTCAAGTAGTAGCAGTGAATCTGAGAGTGATGCAAGTGATTCTGAAGAAGATGGGGATGAGGTTGAAGAGGAGAGTGAAGAAGGGAGTGAAGAGGAAAGTCAGAGTGACactgagagtgagagtgaggaTGAAACAGAATCAGAAAGTGAAGAAGAAAAGGAGCAAAACAGCAGCAAAATCCTAGCTGTTGAAACAGATTTGGCACAACAAAGTGAACAAGACCAGGAAATGCCAGCAGTAGTtattgaaaaacaacaagTGGATATTGCGGAGTCCTCCCCTCAGGTTCCAGTGGGTTCATCAAGTCCTAAATGGAGTGACAACACCGAGACTGCAAGCATGCAACCTGACAGAACAACTGACACAGCAGATCTGGCAGAAAAGATCAACCGTCGAGTTGATCAGGAGCCATCGAGGGAAACTTTTCAATCTTTCCACATTGCTAACATTGTACCTGATTTGTTCAAAACCAAAGCTGTCTCTGAAGATGAAAAGGTCTCATCTGAAAGTGAAATggaaacagcaaagaaatgtcaGGAACTTGACACTGAAATGAATGTTGAGGATCTCAACCAAGATGCTGAGAACAAATACATTCCCTCAGAAGATGTAAACATAACAAAATTGGAAGAGCCTTTGGGAAaaacagatgcaaaaataattatggGTTCTTCAATGTTTGATTTCCATGTTAAAGAGGATGCTGAATCTCCAAATATTGATTCTCTTCCCAAAGAGGAGGAGGACGTTGAAGCAAATGAAAGTGATGGCATGATTAAGAAACAAATGCCACGTTTTTCTCAAGATAAGCCCTTGGCTGTGACACTTGTTGAATTAGACCATTCATATGGTTTAGTGGCTCCTGTGGAACCAGGACCTTTCTCACAAGGAGTGGACAAACCTGAGATTTTTGACAAAAACAGCGAGGAGCCGTGCCTCCAAGGTGACAGACAATTGACTGAGTCACCTGTGGTTGACATAATAACCATTGACTCTGTAGTGTCCAGTCTTCCAGTTCCAGACCTCCGTCCTCCTAAGCACCGGTTCCCTCTCAGATCATTTGAGAGTGATGATGAACTGGTTTACGAGTTTCGTAGACTCGGGATTGATGCAGAAGACTGTTATTATATGAAGGTTGGCTTTGAACAGCTTCAGCAGGTTGGATCCGAATCAGTTGTTGATGCCCACTGGAGCAGTCATCCACATATCCTTGTTAATAACATGTGCAGAAATTCAGTCCAAACTTTTATTGTTCTGTTGATTACTTATTCTGGAGTGCTTCCCATTTGA

Transcript

BRAKERYMET00000023531

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CFT2	Histone-lysine N-methyltransferase SETD1B OS=Mus musculus OX=10090 GN=Setd1b PE=1 SV=2
Q9UPS6	Histone-lysine N-methyltransferase SETD1B OS=Homo sapiens OX=9606 GN=SETD1B PE=1 SV=3
Q66J90	Histone-lysine N-methyltransferase SETD1B OS=Xenopus laevis OX=8355 GN=setd1b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004285 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044570 all species →	Family	Histone-lysine N-methyltransferase Set1-like	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45814 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE SETD1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042800 all species →	Molecular Function	histone H3K4 methyltransferase activity	Interproscan
GO:0048188 all species →	Cellular Component	Set1C/COMPASS complex	Interproscan
GO:0051568 all species →	Biological Process	obsolete histone H3-K4 methylation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000023531.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.