Genomic Location: BLFK01000704.1:6122622...6126899
NR annotation: RMX48634.1, hypothetical protein pdam_00007993 [Pocillopora damicornis]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000024523 |
| Transcript |
| BRAKERYMET00000024523 |
| Protein |
| BRAKERYMEP00000024523.1 |
| UniProt accession | Description |
|---|---|
| P13984 | General transcription factor IIF subunit 2 OS=Homo sapiens OX=9606 GN=GTF2F2 PE=1 SV=2 |
| Q8R0A0 | General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE=1 SV=1 |
| Q01750 | General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2f2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004898 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17683 all species → | TFIIF_beta_N | TFIIF, beta subunit N-terminus | Family | Interproscan |
| PF02270 all species → | TFIIF_beta | TFIIF, beta subunit HTH domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR040504 all species → | Domain | TFIIF, beta subunit, N-terminal | Interproscan |
| IPR003196 all species → | Family | Transcription initiation factor IIF, beta subunit | Interproscan |
| IPR040450 all species → | Domain | TFIIF beta subunit, HTH domain | Interproscan |
| IPR011039 all species → | Homologous_superfamily | Transcription Factor IIF, Rap30/Rap74, interaction | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10445 all species → | GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005674 all species → | Cellular Component | transcription factor TFIIF complex | Interproscan |
| GO:0006366 all species → | Biological Process | transcription by RNA polymerase II | Interproscan |
| GO:0006367 all species → | Biological Process | transcription initiation at RNA polymerase II promoter | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03139 | TFIIF2, GTF2F2, TFG2; transcription initiation factor TFIIF subunit beta | EC:5.6.2.- | Transcription machinery | ko03021 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
