Gene detail

Detailed information of BRAKERYMEP00000024558.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_020625544.1, activating signal cointegrator 1 complex subunit 3-like [Orbicella faveolata]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000024558

ATGTCCCCAATAGAACTACCGCGGTTAACAGGATCCTTGCGAGCTTTCTCAGGGCTCTCGTGCCCACATTTGCGACAGACAGAAAATGATGACGTGCTAAAGAGAAAGCGAAAGCTGAGATCAAAAAAGCAACAGGAGAGAACTTTATCGTGGTCTGAATTAAAAGGTTTGATATTAGATGCTACCAGCTTTGACAAAAATGCCACTCAAGAGGTCAGGACATTATTAAAGGAACTTCTTCAAACTTCTGGAGAAATCGttGGCAAAGATTCCTCTGGAGAGGCTGTGGAAAGTGCATCAGTATTTGTTTTCATAACTTTAAAGTATGCAGACCACATTGGAAGAGATGAAACTTCAAAACTGAGACACTTTTTTGGGGCATTTCCGGCATCATCTGCCACCAAAGCTTGTCACATTGTCAAGAGCTTAATTTCAATTCTTCCAGAAAACTGCTTAGCAGTCATAAATAAAagaagtgaagaaaaacaagatgaaCCATTGAAAGAGTTTGGTAGTGACATAAAATTTATGCCATTACAATCGAAAGACTTCTCTCTTGAGAATTTGCTTTCTGATTCTGAAGACGAAGAAGTTGAACCTATGATTAGCTTTCCCCATTTCAAAGAAAAGCCTGTAGCAGGTGGAGAAACTGTGAATATCACAACCAATAGCAGAGAGGATATTAGTGGTTCTTGGTTAAGAGAGCAGTGTGAATTGTATTTTGCTGATAGCTCTAGTGGCCTGTCTGTCTTGGATCTTTGCTCAGCAGTATTTGACATTCTGGCCTCTGACAGAGATGATGCAGCTCTGCAGAATGAGTTATTTGAACTCCTTGGGTTTGATCGGTTTGAGTTCATTCAAACACTTTTGGCTAACAGACATAGGATTGTCATAGCAACTTCTCAAAGTGCTTCTGATTTAACTGACCGTAAGGAGAGCAACAGAGTCAAGTATCCAAACAAGCCTTCGTATGGATGCCAAGTAACTGTGCAGACAGAACAAGAAAAGCTGTTGATGAAACAACTCAGAAAGGAAGAACGGAAAGAAGAACGCCGCCAGTCTCGTCGAGACAGAAAGCTGGCCTCAGATGAACAGGACATAGATCAAGAAACATATCTCAAGAATGTTGGCTTTGATCCTGAATATATGAAAACACAAAGGGAGATTGCTCTCCAGGCAGCATCCAGTGCTCCCTTATTTTCACGACCAAAACGGAGCACACCGCCCTCTCAGGTTTATCCTTATGTATTTGATGCTTTGGCCGAGACACAGCGGGCAACAGCTTTTATTTCGGACACCAAGATTTCTTTGCCTACAGACGCTCAGCGTAAAAACACTAAAATATTTGAAGAGGTCGTTATTCCTCCCAATACCCCTCTGCCGCCTTCGGAAGGGGAAACGTTGAGACCAATTTCTTCCTTGGATGAGATTGGTCAGATGGGTTTCAAAGGCATGAAACGACTCAACAGGATCCAGTCAGTTGTGTTTGAAGCAGCATATACAACAAATGAGAACCTTCTGATCAGTGCACCAACTGGAGCAGGCAAAACAAACATCGCCATGTTAACTATCTTAAGGGAAATCAAACAGAACATCGAGGAAGGAGTTATCAAAAAAGACAAATTTAagATTATTTACGTAGCACCTATGAAGGCTCTTGCCGCTGAAATGGTCCAAAACTTCGGCAAGCGACTGGCACCTCTGGGTATTTCAGTCAGGGAACTCACTGGAGACATGCAACTTTCAAAAGCTGAGATCCTCAAGACTCAGATGTTGGTAACCACGCCTGAAAAGTGGGACGTGGTGACGCGGAAGAGCACAGGAGACGTGGCGCTAGCTCAGCTCGTGAAGTTATTGATCATTGACGAAGTTCATTTGCTGCATGACGACAGAGGCTCAGTTATCGAGTGTTTGGTTGCTAGGACCCTACGACAGCACAACACTTATCACTTCACTGTGCTTCAAAAAGCAACATTGACTTTCAGCTGTAAGTGCCCTTCGATATAG

Transcript

BRAKERYMET00000024558

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1NTD6	Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus OX=9031 GN=ascc3 PE=3 SV=2
F1LPQ2	Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Ascc3 PE=3 SV=1
E9PZJ8	Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus OX=10090 GN=Ascc3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001413 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF18149 all species →	Helicase_PWI	N-terminal helicase PWI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050474 all species →	Family	Helicase Hel308/SKI2	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR041094 all species →	Domain	Brr2, N-terminal helicase PWI domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47961 all species →	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000024558.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.