Gene detail

Detailed information of BRAKERYMEP00000024562.1 in Astreopora myriophthalma

Genomic Location: BLFK01000704.1:1874782...1880146
NR annotation: XP_029192194.2, WD repeat and coiled-coil-containing protein-like isoform X1 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERYMET00000024562

atggcggcgaaAATTGAGCTTGGAGACTGCAAACTGCTAAGATCGAACGCGAATTACTTGCATCAAAGTCTTCGAAAACACGCCGAAAATGTCAGAAACTTGTCCTCTTGGGAGTTAGCGTGGACTGATGGAGAAAGAGTTTGGTTGTCGCCGGTAGATTTCAATTCCCACCGCAGTGAAGTTTCTAGTATCACTGCAAAGGATGCCTGTTTGATTGGGGAATTTGAAGGCTTTGTTGTTGGAGTCTCGTGCAGCTCATTTACCGAGGGATCTGATGGATATTATATATCtgttattttaaaagaaaaaatcgtTGTTTTGTTTAGGCGAATCGGTGATGGCGTCGGTAAGGTCGTGAAGGAATACTCTACAAATTGTACACCGCACGGATGTGCTTGGCACCCAAGTCTCCCATTGGTAGCCGTGCTATCGAAATCATCGGCCATTCTTCTATGCTTTTCTGAACAGTTCAGTTGTTCTGTGATCCCAATCAAGGCATCTCACGGAAATTTACAAGCTTGTACTTGGAGCAATAATGGAGAACATCTTGCTGTTGCTGTAAAGGACAGCTTGTGGGTATTTTCATGGACTGATTGGAATGAACCGAATCAGTTTACTTTTATTCAGTGGAACCATCTTAAAGTGACTGGAAGAATAAAGTGCATTGTGCCATGGAAAACATGTTCATTTGTAATTGCTACAGAGCTTCCTTTGGAGCAACTTTGTGGAAATGATGAAAAGAATTGTGATTTGTTTGAGGTTGAAAATATTAGCCACTTTCAACAAAATGGGCAAGAATGTTGTGAGGAGAGTGCAACAAAAACTTCTGGCTCTAACACAAATACTGACTTGACCATTGTTACCAAGACAACTGACCTTGATGTTAGCTCACCATTCAAGTTTAAGCTCGGGAAACAACAGCTCGAAGCTCCATCAACTTTGGCACAGATTGTTGCAATAAATTGCCAGGATTCAAAACTGATTGAAATCTGTAGAGCAAGCATAAAGGGCCTTGTTTCTCCAGACTTGCTGTTAGTTCAGCCTGTGTCAAATTCAGTTGTGGTAGGAAGCCATTGTAGCAGCAAACTTTACTGCTTCAGTCTTCTCCCAAGTGCTCTGAATGACAAAGCTGAGTTCAAGGCAAAAGAGGAGTTATTGGAACTTAATGATGAAACAAAACCTAAGGGAATATGCCTTATTCCTGGGATTACAAACAGCTTTCTTGTTTTAGTTGGAGAAAGTAAAGAGTCCAATGTGGCCACTTTTCCACCTTCAGCATTCACTCAACACTATGATGTGAGTTTGCAGTGTTTTGGCATGTTCTGTGGTGAAAACCTTGCTAAGAAGTCGGTGGACAAGTTTGATCGACCAAAAAGCAATGATTGGTGGCTGAGCCAGGGGAGTCTTTCAAATGGAGATGACAATGCAAGTGGTGTTTTTTCAAACAATGACTGTTCATCATCTTTAAGGCTTCCTGATGGAAGTGTCTTATGTGGATTAACCAAGCCAGAAACAAGAGAGGAAATGCCAAAGCTGATATCTGAACTTAAAGTCACAGATTGTCCAGAGATCAATGGAAACTCCAAGGAAATGTCTCAAGaaaaCCTCAGCAATTGCTTAAGAAACATCCATGAAGTTCAAGCAGCAAGGAAAGCTTCGCTTTCAACTATAACTGAAAAATTGTCTGCTTTGGAGAAGAGAGTAAAAGAAATTGGGTCTAACTTGACCTCATATCCATTGCCAGAAAGTGCAGAGTTTGTTACAGTAGCGTGGACTGATGAGTTGACTGGGGCAgtggaacaaaacaattttcttcttGACAAAGGTCGTTTGAAACTGAAGGCAATAAAGCAGACATTCAGTGCTTCCCTTGTTAGGATTTCCGTGGGTGATGTGCCATGTATTGTGTCATCCGGAGAGGGTGGCTTCATCCCTCTGAGGTTTCTGAGTGGCTCCACTGTTCAAATGTCCGGGCACTCGAGACATCGTCAAGAAACCGGCTGA

Transcript

BRAKERYMET00000024562

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010622 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15390 all species →	WDCP	WD repeat and coiled-coil-containing protein family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR028041 all species →	Family	WD repeat and coiled-coil-containing protein family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14897 all species →	WD REPEAT AND COILED-COIL-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019900 all species →	Molecular Function	kinase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000024562.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.