Gene detail

Detailed information of BRAKERYMEP00000024599.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044180218.1, LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000024599

ATGGATGAGAAGACATATTTTGATCAATTTTGCCAGCAAGCTGGACTTGATGAAGAATGTGGAGAGAAATCCTGGACTGTTTGGGAATCTGTTTCCACAAAACTCTCAAAAACTGCAAAGTGTACCCTAATTCCATGGTTTGTCTGTGCTGCATATGTGATGCTTTGTCACAAAAAGTATGCTGCTGTCCAAGCTGGTGAAAGTGGAAGGGCTCAGCACTCAGTACATGACCTCTTGAAAGTTGCAAAAATGAGgatggttgacttttttgaaAAGATGAAAGAGTTTGCTGGGATTTGTGATGTTAGAGAAAGTGTAACTGAGAGCCTTACTGAATTGAAGAGAAAGTTTTGCATATCTTCAGCTTTGTTTTACAAGTTTAAAAGAGTTATGCCAGTTGTACTAAATGATCGAGCATTTTGTTGTGAAAGTGAGAAAGCAAAGGAATCCTTTTTCAAGACTTGCTGGCTATTATTCATTGTTTGCAAAGATTGGCAATCGCATCAAGTGGGAGATTTGATGACAGCATTCTATCTGTTATTGTGTTGTGTGGATTTTGTTCATCAAAGATTGTTTATATCCAGACAGAAATGTACAGATGTTTCAGAGTTGGAGACAAATGTTACATTGGAACAAGGAATTCTGCCAGAGCTCTGTCAAGAGTCTAATGTCCCGTATTCGATGGTGAATGCAATCCACTCACAGTACTTTCAGCCATTTCATGACAGCAAGATAGATGACTTAAATTCCACATATGAGGAAATTTATCGCAAGTATCAAGATGTTGATGAAAGAGACTTCTTCGAGAAGGATGGGTGCTTGTGGACACCCCTTGGTGAAAATAACAGCAATGGTACTGACATTTTAAATGGAGGAAGTGTCGTTATTCCTGGTCATGAATCCAGTGCAATTGCAACAATCACATCATCCAGAGGACCTTATTTATCTCCAGCAGTCAATGATCTAAGAGCTGAGCTCAATAAAATGAGTGATTCACCAAGTGAAGAACTCGTGAGATTTTGGAAGTGTTGCAAAAGAAATCCTCAAGAGTTAATACACTTACAGCTGACAGTAGATGTTCTAGAGAATTTTATTGAAGCCTTTACAGAAGGTGTCAGTGAAGAAAACAGTAATGCATGTATCCCAAATGAGATTTTTAGTCAAGCAAAGAGGCTATATTACAGAGTTATGGAAGCAATGCTGCTAGCAGAGGAGAAAAGATTGTCTTGCAGCGATTTCAGTGCCTTACTGAACAGTAAAGCATTTCATCTTTCTCTCCTGGCCTGCTCGCTAGAGGTGGTTATTGCAGACAAATCATTTCAATGGCCAGTTCTCAAATTTCCTTGGATTTTGAATGTCTTGGGGCTAAAGGCATTTGATTTTTTCAAAGTCATAGAAAGCTTTGTTCTTCATGAGCCACTTCTTGGCAGCAATTTAGTTAAGCATTTGAATTGGTTAGAAGAGCAAGTGCTGGATAGTTTAGCTTGGACAGCGGAGTCACCAGTTCTAACAGCAATGGGGGCTGCTGCATCAGACTCTTCATCAGAaTGCACTGCTCAACAGCCCAAAAAATCTCAAccattaaatttaaatttattcctGAGGAAAGtGAACCTGTTAGCTTACAATCGATTAGTGTCACTTTGCAATAAACTTGATGTTGATGATACATTGcgTTGTCACATGTGGACCTGCTTGGAACAATCATTGAGACAACACTGGCATTTGCTGAAAGACCGACACTTGGACGAGATGATATTGTGTGCAGTTTATGCCATTTCAAAAGTACTCTGCAAAGAGATTCAATTTAAACAGATTGTCACCTCGTACAAAAGCCTTCATTTTGCCTCTTCACAGGTGTACAGGGGTGATTGTGACAAAGTCCAAGACACCATCATCGGATTCTACAATGGAGTCTACATGGTGGCCATGAAACCCATCATACTTCAGTTTGCTCCAAATAAGATTCCTCCAGTTTCCCCTGCTCCCAGGATGTCTGTGAGGGTTGCTGGGAAAAAGAACTTTTATTTGTCTCCTTTGAGGAAGTCTCCAAGCGAAGCTTTGACTCCCAGATCAAGGTCACTGTACAGTTTTGGTGATTCACCAGGGTCCGGTGATCGGGAGAGTTTATCAAGGATCAATGCCTCAGTGCGTGCGGTGTATAGTCAACCCAACGTACCGCAAAAGAGATTGCGTTTTGACGGCTGTGACGTCAATGAATCCCCACCAACCCTGGAGGAGGATAAGGCGAGTGGCGCAGATTTGACTGGAACAAACGAGGAGAAATTACTTCAAGAGGAATATAAAGATAGGAGTTGA

Transcript

BRAKERYMET00000024599

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13405	Retinoblastoma-associated protein OS=Mus musculus OX=10090 GN=Rb1 PE=1 SV=2
P06400	Retinoblastoma-associated protein OS=Homo sapiens OX=9606 GN=RB1 PE=1 SV=2
P33568	Retinoblastoma-associated protein OS=Rattus norvegicus OX=10116 GN=Rb1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008552 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11934 all species →	DUF3452	Domain of unknown function (DUF3452)	Family	Interproscan
PF08934 all species →	Rb_C	Rb C-terminal domain	Domain	Interproscan
PF01857 all species →	RB_B	Retinoblastoma-associated protein B domain	Domain	Interproscan
PF01858 all species →	RB_A	Retinoblastoma-associated protein A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002720 all species →	Domain	Retinoblastoma-associated protein, A-box	Interproscan
IPR024599 all species →	Domain	Retinoblastoma-associated protein, N-terminal	Interproscan
IPR028309 all species →	Family	Retinoblastoma protein family	Interproscan
IPR015030 all species →	Domain	Retinoblastoma-associated protein, C-terminal	Interproscan
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR002719 all species →	Domain	Retinoblastoma-associated protein, B-box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13742 all species →	RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:2000134 all species →	Biological Process	negative regulation of G1/S transition of mitotic cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000024599.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.