Gene detail

Detailed information of BRAKERYMEP00000024610.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029180635.2, unconventional myosin-VI-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000024610

ATGGACGGTGGAAGAAAGGTTTGGGTGCCTGAAAATGAACATGGCTTTCGTCTGGGAGAAATAGTTGATATTGGATCCGATTCCATCACAGTTCAAATCGACGGTCCGAAGGGAAAGGTTATAACTGCTCCTTATGATCGTGTTTTTCCATCAGAAAAGGATAATACTAGAGATTTTGAGGACAATTGTTCTTTGATGTTTCTAAATGAAGCAACTTTATTGCACAACTTGAAAATTAGATACCAGAAGGACAAAATATATACCTATGTTGCAAACATTCTGCTTGCTGTCAATCCATACCATGAAGTCAAAGAACTGTACTCCAAGGAGAGAATTAAACAATATCATGGGAAGTCACTTGGTGTGTTACCACCACATGTATTTGCTATTGCGGACAAGGCATATAGAGACATGAGAGTGTATAAACAGAGCCAGTCTTTGATTGTCAGTGGTGAAAGTGGTGCTGGGAAAACTGAATCAACTAAATATGTTCTGCGATATCTAACAGAATCATGGGGGTCTGGCAATCAGGGTCGCATTGAGCAGAGAATTATTGAAGCAAATCCTCTCCTTGAGTCCTTTGGAAATGCCAAAACTCTGCGTAACATCAACAGCAGCAGGTTTGGCAAATATGTGGAAGTCCACTTCAATGAAAAGGTGACAGTTGTTGGTGGGTTTATCTCTCATTACCTTCTGGAGAAGTCACGCATCTGCAAACAAAGTAAAGGAGAGAGGAACTATCATGTTTTTTACAGACTCTGCTCTGGTGCACCTCAGCAAATTAAGTCAAAACTTGGAATCACAAAAGCAGAGGACTTTCTGTACTTGAAGCAAGGTTCAATCAAAGATAAAAACCTTGATGATGCAGCAGATTATCACAGAATGGATGAGTCCATGAACAAAGTTGGATTTTCAGAAGAAGAGAAAGCCAATATCTTCAAGGTTGTGGCAGCAGTGCTGCATACCGGCAACATTGCTTTTGAAGACAGTGGAGACAAAGATGgagGTTCAGTGGTGTCATCTAAGAGAAACAACTCGCTGAATTTTGCGGCTCAGTTACTGAATGTGTCCCCTGAAGAGCTGAAGATGTCATTGACAACCAGGAAGATGTCAGCTGGGGGGTCTGACATGAGAGTACCACTGAAGCCAGAACAAGCTTGTGCTGCCAGAGATGCATTGGCCAAATCACTTTACACCAAGCTTTTTGATCACATTGTTGGTCAGATCAATCAATGCTTTCCATTTAAGGCCTCCTTCACATTCATTGGTGTTCTGGACATTGCTGGCTTTGAGTACTATGAATTTAACAGCTTTGAACAGTTCTGCATCAATTATTGCAATGAAAAACTTCAGCAGCTATTTAATGACAGAATTCTGAAACAAGAGCAGGAGCTGTACGACAAGGAGGGTTTGGGTGTCAAAACTGTGACGTACATTGACAACCAGGATTGTATAGCCTTGATTGAAGCAAAAAAGACGGGAATTATCGACATTCTGGATGAGGAAAGCAAGCTGCCCAAACCAACAGCGGAACATTTTACACGGGAGCTTCATCAAAAGCACAAGAATCACTTTAGGCTGGCTcttccGAGGAAGTCTCATCTTATGTaccacaagaaaatgagggatGACGAAGGATTCCTCATACGGCATTTTGCAGGGGCCGTGTGCTATCAGACGGCAGAGTTTATAGAGAAGGATAATGATGCTCTTCACAGCGATCTTGAGCACCTTATACAGGACAGCAAAGACGCTTTTCTTAAGAGTCTGTTTCCTGGTGTAGCACAAAAAAACAACGGCATTGGTTCAATGACGTTTGGTGGACCAACCAAGTCCAGCAGCAAGAAACTTGGCTTTATAAGTGTTGGAAGCAAATTCAGGACCCAACTGAATCAGCTCATGGAGAAACTCAACAACACCGGTGCAAGTTTCATTCGTTGTATCAAGCCAAATGGAAAAATGGTAGCCAAAGATTTTGAAGGAGGCTCGATTCTGAGTCAACTTGAATGCGGGGGAATGGTTTCAGTTTTGACGCTGATGCAAGATGGCTGGCCATCAAGAGCGCCCTTCAAAGAACTTTATCATATgtACAAAAATTACTTGCCTGGTCGACTTGTGAGGCTTGATCCAAGAATGTTTTGCAAGGCTTTGTTTCACGCCCTTGGTATGGACGACAAAGATTACAAATTTGGTTTGTCCAAAATCTTTTTCCGACCTGGCAAGTTTGCAGAGTTCGATGAGATTATGCAATCCGATCCAGAGAACTTAAAGAATATTGTTTCCAAAGTTGTTACGTGGCTTGTTCGAACACGCTGGAGAAGAGCTATTTGGGGAACACTGTCTGTCATTAAATTGATGAAGAAAATTGCTTTCAGAGCGGAAGCTATCATCCGAATTCAGAAAACTGTTCGAATGTTCTTGGCAATATGCCGCCACAAACCACGATACCAAGGAATCATTAAAATCCGAAGATTACAGGTCCAACTTACTCATTTAGGAAAACTAGTGGGATCTTTGAAGAAAGACCAGAGCGTCATAGCTCAAGATGTGGAAGGACTCAGAAAAGCCATAGATGGTGCTGTTGTAAAAGTCAAGAGCTCACTGATGAAGCGAGACGCCATTGATGTACTGTACTTTGATCTGGTCGGtaaattgaacaaacagttAAAGGAAGTCGAGCGGCGTGTGGAACAGCAAAAGATTGAAGAAGAGCAGGAGCGGCTGCGCAAAATCCAGGAACAAATggaacaggaaagaaaaagacgagaagaagaggaaagaaagagaaaacaggaggaagaagagaaaagaCTGAGAATGGAAATTGAGGCCAGACGAAAACGGGAGGAGGCAGAAGAGCGCAAacgggaagaagaagaaagaataagaagagaaaaagaagaggCTGACAGGCAGTTGCAAGCGTTGAAAGCTGCCGAGGAACAAAAAGCAAGAGAGGAAGAACAACGACAGCTGGCTATGATTGAACAGGAGCGGAGAGACCGTGAATTGGCTTTGCGACTTGCACAGGGACCCGACGCTCTTGATGCGGAAGCTCAACAGGCACCCCAGCATCCACTTCAGAGAGCTCTGCTGCCAtcaaaagagaagaagaagcaTGATCTGACATCCTGGAAATACGCCGAGTTGCGCGACACCATTAATACCTCATGTGATATTGAGCTGTTGGACGCCTGCAGGCAGGAGTTCCATCGGCGACTGAAGGTTTATCACCAGTGGAAGAAACAGAACAAGGCTCGAGTAACGGACCCACAAGGAGCACCGCAGAGAGCTCCACAGGAAGTCATTGGAGCAGCTGCCGAGGCTCCAGCCCTCCCTCCCAGACCGAGTAAACAGGAACCAGTTGCTGCCCCAGCCCTCCCCCCTCGGCGAGCGCAAAGGTTCTTCCGTGTTCCTTTCGTGCGGCGATCAAACCAGTATCGGGATAGCGAGTTCAAGAAGCAGGGATGGTGGTTTGCTCATTTTGATGGTCAGTGGATTGCGCGCCAAATGGAACTGCATTCCGGTCGGCCTGCTTTGCTATTGGTGGCGGGAGACGATGATCTGGACATGTGCGAGCTAAGTTTGGACGAGACCAGGCTCACCATGCGACAAGGAGCTGAGATAACCATGAGAGACTTTGAAACTGAATGGCAAAGAAACGGCGGCGCCCCACGGGAATATCAGGCTAAAATGTATCAGACAGAAAACtga

Transcript

BRAKERYMET00000024610

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64331	Unconventional myosin-VI OS=Mus musculus OX=10090 GN=Myo6 PE=1 SV=2
E1BPK6	Unconventional myosin-VI OS=Bos taurus OX=9913 GN=MYO6 PE=1 SV=4
Q9I8D1	Unconventional myosin-VI OS=Gallus gallus OX=9031 GN=MYO6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003951 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02736 all species →	Myosin_N	Myosin N-terminal SH3-like domain	Domain	Interproscan
PF21521 all species →	MYO6_lever	Myosin VI, lever arm	Domain	Interproscan
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan
PF16521 all species →	Myosin-VI_CBD	Myosin VI cargo binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004009 all species →	Domain	Myosin, N-terminal, SH3-like	Interproscan
IPR049016 all species →	Domain	Myosin VI, lever arm	Interproscan
IPR036114 all species →	Domain	Class VI myosin, motor domain	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032412 all species →	Domain	Myosin VI, cargo binding domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR008989 all species →	Homologous_superfamily	Myosin S1 fragment, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13140 all species →	MYOSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030050 all species →	Biological Process	vesicle transport along actin filament	Interproscan
GO:0030139 all species →	Cellular Component	endocytic vesicle	Interproscan
GO:0031982 all species →	Cellular Component	vesicle	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10358	MYO6; myosin VI	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.