Gene detail

Detailed information of BRAKERYMEP00000024655.1 in Astreopora myriophthalma

Genomic Location: BLFK01000704.1:5108323...5118258
NR annotation: XP_044183181.1, origin recognition complex subunit 3-like isoform X1 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERYMET00000024655

ATGGCAGATGAAACGAGCTCAGTTTCCAAGGGTTGCTTTCTGATCAAGGGAATTTCTGGGAAGAGTTCACGAAAACGTGCTGCAGAGGATTATTTCCCAGAAGTTGCTGGTGAAAGTGCAGCTCACCGCAAGCTGAGATATGCAAACTATAAAGAGTGTTGGGAATCCATGAAAAGTGAGATTGAGGGTCTACAGTCACAGATGAACAGTAAAATATTTTCTGATCTGATGGAATTCATCAAGAAAGCTCATAAAGTGAAATCTGTGGAAAGAATAAAGACTACTGTTATACATGAAATACCCACAGCAGCACTGATAACAGGTGTGAACATGCCAGATCACAATGTGATTTTTTCCCAGCTGGCAATGGACCTAAAAGACCAAGTTACTCCTTTTGTTGCTGTTCTGTCATCTAAAGATTGTGCAGtaaTGAAGACAACCATGAAAAATGTAATATCTCAATTTATTGGCTGTGATGTGGAAGATGAAGAAGATCCTGTACCATCACCCCAAGCCAAGAAGATCAGCAGTTTTACAATGCCACTGCTTTGTCATTGGTACAAGAAAATGACTCAGAATGATGGTTCAAAAAAACAATGTAGCCCCCCGAAATCTCAGTTTTCAGATCATCCTCCTTTGGTCATCATCTTTGAGGACTTTGAAGGTTTTCCTCCTGCGgtggttcaaaattttgtaaCAATTTGCAGCCAATACTTAACTGAACTTCCACTGGTTTTGGTGTTTGGAATAGCAACTGCAGTGACAGCCATTCACAGGGTACTTCCCCATGCTGTTTCCAGTGTATTGTCAATAGAAAGATTTCAATCTCAGCCATCACATATCTGTGTTTTGGAGATCATCAACAAGGTGCTGATGACTGCAAAGTTTCCATTTAAGCTTGGTGCAAGAGTTTTAAGATTCCTGTACGATAATTTCCTGCTACATGATTTCTCAATACAAAACTTTACCAGAGGACTGCAGTTTTGCTTGATGGAACATTTCTTTGAGACTCCTTTGAGTGTTCTGTGCTGTATTTCACCAAAGAACAGGAGGGATATTGTGGATAAAATTACCCACAAACAAGTTGAGATGTGTAGAAGGACAATGTCTTTCCGTAGATATGTTGAAGGTGCTCCACCTACAAAGCAACTTGAGCTGTTGCTAGAAGATCCTTTAACAAAGGGTGTCATATCTGAGTTGCTGGATCATCTTGATCAGTACCACTGGTGTTTCTTTCCAGTCCTTCAATGTCTGCATGTTGTCACCAGAAATCTACCAAGACATCCTTTAGGGAAAAAGAGCTATGACGTTTATGAAAACAGTCTCTCAAGCAACATCTGTGATCAGGAAGAGTACAAAGAAGCAATGTCTTTGCTGAGGGTTTATTCAAGAGATGAACTCCTTCCACTACTTGAGAAATGTATTGATATCCTAGGATGTGCTTTGAATGAAACTGAATCCAAAATGCCCTGTCAGCAGCTAAGGGAATCAAAAGATGCCATAGAGGGAGTCCTTCACCAGTTTGCAGATCTTAATGGCATTCAAGAGACCCAAGAACATGCTTCAAGCTCATCTTGTAAAGAACTTTTAACTGTTACAAACAGATTTGAACTTCAAGAGAGACTAATGCATGCTgccaaacagaaaagaaaagagtcaCCATATGATAAGCTGAGACAAAGAACTGTGGACACATTGCATGTGATGTTTAGGAAATTTCTAACTTGTCCACGCAACCTGCCACTGTTTGAAGTAATGTACTATGACAATGTACAGGAGACAAGAAAGCATCTGATGGGAATGCCTCGTGTAGCTATCCAAACGGCACTCAGCAATCCACAGTATTATCTTAAGTGTGAGTGTTGTCAGACAGATGTAGGAACAGTCCAAGACACTTTACCAGACATTTGCATAGCTTACAAACTTCATTTAGAGTGTGGACGTTTAATCAACCTTTATGACTGGCTTCAGGCATTTACAGCTGTTCTAAAGCCTCAAACAGCTCAACAATCTGGAAGAGGGTCACCAAAGAAAAAGCAGAAAACAGATGAGCAACTACATGCCAGGTTCATACAGGCTGTGTCTGAGCTGCAGTTTCTAGGCTTCATCAAGTCAACAAGACAGAAAACTGACCATGTACAAAGGCTTACTTGGGGAGCATGTTGA

Transcript

BRAKERYMET00000024655

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5DJU3	Origin recognition complex subunit 3 OS=Spermophilus citellus OX=9997 GN=ORC3 PE=2 SV=1
Q9UBD5	Origin recognition complex subunit 3 OS=Homo sapiens OX=9606 GN=ORC3 PE=1 SV=1
Q4R180	Origin recognition complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Orc3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003791 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18137 all species →	ORC_WH_C	Origin recognition complex winged helix C-terminal	Domain	Interproscan
PF07034 all species →	ORC3_N	Origin recognition complex (ORC) subunit 3 N-terminus	Domain	Interproscan
PF19675 all species →	ORC3_ins	Origin recognition complex subunit 3 insertion domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040855 all species →	Domain	Origin recognition complex subunit 3, winged helix C-terminal	Interproscan
IPR020795 all species →	Family	Origin recognition complex, subunit 3	Interproscan
IPR045667 all species →	Domain	Origin recognition complex subunit 3, N-terminal	Interproscan
IPR045663 all species →	Domain	Origin recognition complex subunit 3, insertion domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12748 all species →	ORIGIN RECOGNITION COMPLEX SUBUNIT 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003688 all species →	Molecular Function	DNA replication origin binding	Interproscan
GO:0005656 all species →	Cellular Component	nuclear pre-replicative complex	Interproscan
GO:0005664 all species →	Cellular Component	nuclear origin of replication recognition complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0031261 all species →	Cellular Component	DNA replication preinitiation complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02605	ORC3; origin recognition complex subunit 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →