Gene detail

Detailed information of BRAKERYMEP00000024807.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029200069.1, endoribonuclease ZC3H12A-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000024807

ATGGCAAAGCATCAAAGAACGGAATTTGTCATCGGAGAAGACAAAACCACGATTTTGAAAGAGAATGTCGAGGGAGTGCGTACCTTGTTTGGGGTTGAGATTACATTCAGTCCTAAAAATCCACATGACCGAATGCAGTGGATTTGCCTCGAGGGCTCTACTGATGAACTTCGTGAAAAAGCTAAGACTTATATAACTTCACTCTGCTGCACCAAGTTGAAGCGCTGTGTCGACTGTGAAATACCACCAAGCGTGTTTGAAGACCTGAAACACGGCGGTGGAGGCCAAGAGATCGAGATGCTCTCTGGCGCCGTGTTGTCGTTCAGCGACGCGAAAGCTTACTTGCAGGGTGATGATTTGGCATTTGCGGTAGCACTCTCTGAAATTGAGCGAAGGATCACTGCTTTTAGAAAACAAACGGAAAGCAATGCCTCTGCGAAATACACAGGAACATATTATGTGGAGCACGATGCTGAAAATATTCCCCAGCATGAGACCGATGGCACAACAGACATTCCGCCTTACATTAGGGAATTTGCGCGAAAACTTGACTTTCAAGACAAAGACATTGACGCAGTTGTAAGAACCTTTGGAACGGAAATCAACAGCAATAAGCTGCTTGACGAACTTGTTAAATATTCTGCATCGACCCTTCGGCTTAGTTCTTCCCCAGAAGACACGATCGTGCCTCCAGTTGCACGCGGAGCCCAGTACCCAAGAGGTACACGTACCTTGCAATCAGGATCAGTCCGAAAGCCGGAGATTTGCGAAGTGGCAGACCAACATGTAAAGCCACTCCAAGCGGATCATTTGCGACCCATTGTGATCGATGGCAGCAACGTGGCCATGCATCATGGAAATCAGCAGATATTTTCCTGTCGTGGGATACAACTTTGTGTTGAGTACTTCTTAAGAAGAGGACATAATGACATTACCGTCTTTGTTCCCATGTGGAGACGAGAGGAGCCTCGCCCAGAAAGTCCGATATCCGAACCGGAAATTCTCGAGGAGCTGGCCAGGAAGAATATTCTCAAATTCACGCCTTCTCGGTGGAGTGGCAATCGCCATATTGTGTGTTACGACGACAACTTTATTGTGGCGTTAGCCGATCGGAACGAAGGGATTATTGTATCCAATGACAATTTTCGAGATTTACAGAGAGACAATCCGCGATGGAAGGAAACTATCGAGCAGAGGACCCTGGGCTACACCTTCGTTGCAGATTTCTTCATGCCTCCAGATGATCCTCTGGGACGCCGAGGACCCTCCTTGGACGACTTCCTCAGAAAAGGCTCTGCAACACACCCTAAAATCTGTCCGTACTTAAAGAACTGTACGTTTGGTAATCGATGTAAATATTACCATCCAGAACGGGACACACAACGGCAACGCGAGAAGTCACCGACGAGAAACTCCCCCGAGACTTCCGAAGCACCTCCCACCTGTTCTGTTGAAGCTCGTTTGAAGCCGACTACCACGAATCAATCAACTAGGAACTCTGTAGGAGACCCTCGGGTTTCCTTGCAACCTCAAGTCATGCAATCGCATTTGGAGAGTGCTTGTACCGTGAGTAACACGTCAATAACCTCAGGTAACGAGAATAGTCAAAACTATCGCGTTAGAGATCCCAGGGTTTCCATCTCGACTTTCCAGTCGAATTTCGAGAATCGTGGAAGATCTCGCGAATTTGCTGTCCGTGGAAGACGCCAAGCTGAGGCAACTGGTTCCTTGTACGATCACACTCGTGATCACTTCCGTAGCGGCGAACAGTACTTCCCGGCTTATCATGGTGGAAATGTTTACAGCGACTACCCTCATCCAATGGCTTCAGATTATAGGGCCAGAAACCCGCAGTACCAGGGGTCCGTATACTGCCCCCCTGGCTTAACCCAGTTTCCTCCACTTCCCCCCGCGCAGTGGTTGCCGTATTCCGCCCAACATCAGTTTCCTCAAGCTGCGGGTACGGGATATCCCACGGGTGCCGGACAGTTTACTTACATAAGAACTTATTTTGAACCCGCGGAAGTTCCATACGGTAAtctccaaggccagagaccTCGGGATCAAGTGGACAGTGGCACAGAGTCGCAAGAGAATTGCATAAGCAAAGAGAAATTTGATGCTTTAGTTGGAAAGTTCGAGGAGGTTTTTGAGCTCAATAAAGAGACAGTAATCCGTTTCCTGCGCAATCACCCGAAAGAATGCGCGGATGAAGATGTTAACAAATTGGCGGAACTCTATGTTGAGAGAGACGCCGACAAGAGGAGTTTAACAGATCTGTTCGTTCGAGAAAGAGAGACGTCGGCAGCTTAA

Transcript

BRAKERYMET00000024807

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5D1E7	Endoribonuclease ZC3H12A OS=Mus musculus OX=10090 GN=Zc3h12a PE=1 SV=2
Q5D1E8	Endoribonuclease ZC3H12A OS=Homo sapiens OX=9606 GN=ZC3H12A PE=1 SV=1
A0JPN4	Endoribonuclease ZC3H12A OS=Rattus norvegicus OX=10116 GN=Zc3h12a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001621 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18039 all species →	UBA_6	UBA-like domain	Domain	Interproscan
PF11977 all species →	RNase_Zc3h12a	Zc3h12a-like Ribonuclease NYN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR051101 all species →	Family	ZC3H12/N4BP1 Ribonuclease and Regulator	Interproscan
IPR040546 all species →	Domain	Rege-1, UBA-like domain	Interproscan
IPR021869 all species →	Domain	Ribonuclease Zc3h12a-like, NYN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12876 all species →	N4BP1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0036464 all species →	Cellular Component	cytoplasmic ribonucleoprotein granule	Interproscan
GO:0090502 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis, endonucleolytic	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000024807.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.